Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0135
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0411 - 2998806-3000938                                           29   4.3  
07_03_0698 - 20765305-20768526                                         28   5.7  
08_02_0230 - 14572854-14574632                                         28   7.5  
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362...    28   7.5  
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350...    28   7.5  

>02_01_0411 - 2998806-3000938
          Length = 710

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/56 (28%), Positives = 32/56 (57%)
 Frame = -2

Query: 327 RLTDHVQNRMTTFEFSSLACLLIGFFSTTVPFELLLVLCNSASPFIASVDIAKIKQ 160
           ++ D+ + R  TF F + ACL + + +TT   E +L L N+    +  ++I ++K+
Sbjct: 518 KVADNSEQRAFTFSFYAGACLCLQYHTTTALPE-MLNLGNNNFTGVIPMEIGELKE 572


>07_03_0698 - 20765305-20768526
          Length = 1073

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = -1

Query: 637 ILWHI*NEIL*LVSQLCPVFGPEMRLPNINR*TADYCCSVPSYRFPSRPALVQFFLNRSL 458
           +LWH   ++L L+S         +   N ++  A YCC       P   +LV  +LNR+L
Sbjct: 459 VLWH---QVLELLSSTGCSDSAVILCTNDSK-MAKYCCDSAKCGPPVIYSLVDIYLNRAL 514

Query: 457 DLFPLR 440
            L P R
Sbjct: 515 ALLPHR 520


>08_02_0230 - 14572854-14574632
          Length = 592

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -2

Query: 315 HVQNRMTTFEFSSLACLLIGFFSTTVPFELLLVLCNSASPFIASVDIAKIK--QTLF*LM 142
           H+  R    +  SL C    F    VP     V   SA+P +A VD+  I    TL  L+
Sbjct: 277 HIDGRTFELDAPSLIC----FRCAQVPSLYFSVSLKSAAPCLAQVDLGSISGTATLGPLL 332

Query: 141 ISMC 130
            +MC
Sbjct: 333 TTMC 336


>07_03_1347 +
           25932185-25932748,25933151-25933755,25935797-25936214,
           25936433-25936555,25936775-25936989,25937157-25937412,
           25937844-25938149,25938764-25938820,25939635-25939685
          Length = 864

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -1

Query: 523 SVPSYRFPSRPALVQFFLNRSLDLFPLRSQSLQRSRLALFSRL 395
           ++ S+R P+R  ++    +R L  +P+R Q L R+ L  + ++
Sbjct: 687 AMASWRLPTRKGVLPVTGDRYLGFYPIRGQPLGRAILISYQKM 729


>03_06_0769 + 36134298-36134356,36134740-36134919,36134975-36135007,
            36135008-36135128,36135227-36135266,36135811-36135863,
            36135937-36135998,36136354-36136506,36136949-36137160,
            36137480-36138972,36140560-36141483,36141734-36142043,
            36143818-36143874,36144114-36144167,36144452-36144510
          Length = 1269

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 182  TDAIKGDAELHKTSNSSNGTVVEKKPISRHAKLLNSKVVI 301
            TD  K D E+ + SNS +  VVEK  +    +++++  +I
Sbjct: 1015 TDGKKADVEVSRISNSDDNVVVEKTVVILENEVVSTPPLI 1054


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,190,212
Number of Sequences: 37544
Number of extensions: 298880
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)