Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0135
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.8  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 451 KDPTTDSEKTEPMPVYWESDKKELN 525
           + P T   K+EPM V++ S ++EL+
Sbjct: 578 RGPVTMKGKSEPMNVWFLSRERELS 602


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 451 KDPTTDSEKTEPMPVYWESDKKELN 525
           + P T   K+EPM V++ S ++EL+
Sbjct: 578 RGPVTMKGKSEPMNVWFLSRERELS 602


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -1

Query: 490 ALVQFFLNRSLDLFPLRSQSLQRSRLALFSRLRVLPLREGRFLLGVFSTYGLKLPFNRSR 311
           AL +F + + LDL       LQ S ++     R + + +G+ +    STY  K+   ++ 
Sbjct: 276 ALGEFVVVKVLDLRSQLEYDLQTSIMSRHYSTRAIVIEKGQSIWDYDSTYIPKVKNKKAG 335

Query: 310 TK 305
           +K
Sbjct: 336 SK 337


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 40 SSCRFLQPGGS 8
          + C FL PGGS
Sbjct: 66 AKCEFLNPGGS 76


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 557 WKTHLWAEYR 586
           WKTH+W + R
Sbjct: 422 WKTHVWKKGR 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,304
Number of Sequences: 438
Number of extensions: 3500
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)