Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0135
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69200.1 68414.m07921 pfkB-type carbohydrate kinase family pr...    30   1.6  
At5g66160.2 68418.m08334 protease-associated zinc finger (C3HC4-...    29   3.6  
At5g66160.1 68418.m08335 protease-associated zinc finger (C3HC4-...    29   3.6  

>At1g69200.1 68414.m07921 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 614

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +2

Query: 155 KVCFIFAISTDAIKGDAELHKTSNSSNGTVVEKKPISRHAKLLNSKVVIR 304
           K  F  A     +   A L +  N  NG VV KKP     +    KVV++
Sbjct: 39  KQSFSMAAGRRKLSESAPLEEEGNDGNGAVVGKKPSKSVKRTTKKKVVVK 88


>At5g66160.2 68418.m08334 protease-associated zinc finger
           (C3HC4-type RING finger) family protein contains Pfam
           domain, PF02225: protease-associated (PA) domain and
           Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
           finger); similar to ReMembR-H2 protein JR702
           [Arabidopsis thaliana] gi|6942149|gb|AAF32326; identical
           to cDNA ReMembR-H2 protein JR700 mRNA, complete cds
           GI:6942146
          Length = 290

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 537 LIIVVQFLLIAFPVDRHW 484
           L+++V FLLIAF   RHW
Sbjct: 177 LLLIVTFLLIAFFAPRHW 194


>At5g66160.1 68418.m08335 protease-associated zinc finger
           (C3HC4-type RING finger) family protein contains Pfam
           domain, PF02225: protease-associated (PA) domain and
           Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
           finger); similar to ReMembR-H2 protein JR702
           [Arabidopsis thaliana] gi|6942149|gb|AAF32326; identical
           to cDNA ReMembR-H2 protein JR700 mRNA, complete cds
           GI:6942146
          Length = 310

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 537 LIIVVQFLLIAFPVDRHW 484
           L+++V FLLIAF   RHW
Sbjct: 177 LLLIVTFLLIAFFAPRHW 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,475,430
Number of Sequences: 28952
Number of extensions: 259370
Number of successful extensions: 680
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)