Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0134
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_22603| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_41691| Best HMM Match : CstA (HMM E-Value=0.62)                     28   7.9  

>SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 28  GCRNRHEEMVKILVPCPLQPCTT 96
           GC   H E  K  VPCP  P TT
Sbjct: 379 GCEGPHSEEAKCEVPCPTSPPTT 401


>SB_22603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 364 LQQNVTYISNNISFTLPFAHNF 429
           L+ N++ +SNNI++T+PF   F
Sbjct: 280 LKMNISNVSNNITYTVPFVTTF 301


>SB_41691| Best HMM Match : CstA (HMM E-Value=0.62)
          Length = 406

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 250 SALGIFLHFSLLYYILNHPTNLIFKIFRHLSTNENKKNTLV*HFYFSTVFY 98
           S  G+F  F  +     H T    ++ + ++TN NKK+     FYF   FY
Sbjct: 281 SRFGVFALFVCI--CTEHKTTKTTRVAKAVNTNTNKKHYGKASFYFVNCFY 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,978,247
Number of Sequences: 59808
Number of extensions: 323150
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)