Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0134
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z81533-11|CAE17829.1|  355|Caenorhabditis elegans Hypothetical p...    29   4.0  
AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine re...    28   5.3  

>AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical
           protein Y71H2B.5 protein.
          Length = 816

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 74  APYNPAPLIEYCTKIKM 124
           A YNP PLIEYC ++ +
Sbjct: 625 AEYNPRPLIEYCRRLNI 641


>Z81533-11|CAE17829.1|  355|Caenorhabditis elegans Hypothetical
           protein F36G9.16 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -2

Query: 601 FLLLSHKSGHVFLLNFFIYYLKTCNFLKKSKRSVLLFHL*TYLKI 467
           F++L+ KS  V+ +N F+  +  C+FL+    SV+L  L  Y K+
Sbjct: 55  FIVLTRKSMRVYTINLFMIGIAICDFLR--LLSVVLGALPHYYKL 97


>AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 69 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 253 NILILLPSINYVN*NTFMHFNRVT*PSFYVS 345
           N  ILLP I+Y+   +   FN+VT   F++S
Sbjct: 240 NFQILLPMISYIPTTSIYLFNKVTGEQFFLS 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,031,592
Number of Sequences: 27780
Number of extensions: 273908
Number of successful extensions: 519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)