Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0134
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    27   8.7  
At4g23510.1 68417.m03388 disease resistance protein (TIR class),...    27   8.7  

>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 232 LHFSLLYY-ILNHPTNLIFKIFRHLSTN 152
           +HF +L+  I  HP NL++ +F  ++ N
Sbjct: 636 MHFRMLFEAIFEHPENLVWNLFTRIALN 663


>At4g23510.1 68417.m03388 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 635

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 220 EKSVEIYQGRRNILILLPSINYVN 291
           ++ +E+ Q  RN+L+LL S+ Y N
Sbjct: 256 DRLIELVQAGRNLLVLLGSLEYYN 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,731,013
Number of Sequences: 28952
Number of extensions: 231982
Number of successful extensions: 399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)