Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0132
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    26   2.8  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   4.9  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   4.9  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   6.5  

>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 5   RSKLVDPPGCRNRHEAKGVGIPPTQPPPSDN 97
           RS L D     N   ++ +   P QPPP DN
Sbjct: 83  RSVLTDFQTAHNALHSQHMAYRPVQPPPGDN 113


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 340 AVNNLDHQDEQE*KVKCKIYS*LNVLNNLFIQVLT 444
           AVNN DH ++Q+   + +  S L V++ L ++ +T
Sbjct: 730 AVNNSDHVEKQKRLAQARFISELCVIHMLDVRAIT 764


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 421 NLFIQVLTALQNFIPETCG 477
           N FI ++ ++Q+F+ E+CG
Sbjct: 427 NKFINLVNSIQSFLKESCG 445


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +2

Query: 80  PPPSDNTANN--RKICSKIPKHQVCTMDRAQIINGALESKELRSDTYELVRLRRCLRDQA 253
           PP  D TA +   K  + + K  VCT+    +     E  + R+  Y +  +R  LRD  
Sbjct: 646 PPGLDATAYSSWEKGDNFVTKKNVCTVMNLWVQKYFFEDLKARNTLYLISEMRTFLRDHV 705

Query: 254 *P 259
            P
Sbjct: 706 VP 707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,624
Number of Sequences: 5004
Number of extensions: 39714
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)