Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0132
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0415 + 3191392-3191952                                           29   2.8  
07_01_0551 - 4105721-4105774,4106090-4106159,4106880-4106945,410...    28   3.7  
12_02_0372 + 18212948-18213821,18213887-18214030,18214128-182142...    27   6.5  
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    27   8.6  
09_03_0057 + 11944973-11947159                                         27   8.6  
03_06_0037 + 31222963-31223886,31225172-31225786                       27   8.6  
02_05_0405 + 28708077-28708391,28708478-28708573,28709030-287094...    27   8.6  
01_01_0189 - 1640581-1640832,1640936-1641132,1641243-1641608,164...    27   8.6  

>03_01_0415 + 3191392-3191952
          Length = 186

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 32  CRNRHEAKGVGIPPTQPPPSDNTANNRKICSKIPKHQ 142
           CR  H +  +GI P+ PPP   T ++ +   K PK Q
Sbjct: 41  CRAFHSSVSIGILPSPPPPPARTYSSPE--PKTPKSQ 75


>07_01_0551 -
           4105721-4105774,4106090-4106159,4106880-4106945,
           4106985-4107479,4107491-4107672,4107728-4108222
          Length = 453

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 8   SKLVDPPGCRNRHEAKGVGIPPTQPPPSDNTANNRKI 118
           + ++DPP  R R   + V  PP  PP    T ++ +I
Sbjct: 232 ASVIDPPRRRRREGEESVAQPPVPPPRRIATCSSEEI 268


>12_02_0372 +
           18212948-18213821,18213887-18214030,18214128-18214273,
           18214854-18214862
          Length = 390

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 71  PTQPPPSDNTANNRKICSKIPKH 139
           PT+PPPS +T   ++  S++ KH
Sbjct: 92  PTKPPPSSSTQPQQRHQSQVKKH 114


>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +2

Query: 287 THY--RISKHQYLQLCSELKPL 346
           THY  R+SKHQ  ++ SELK L
Sbjct: 257 THYLARMSKHQLYEIMSELKSL 278


>09_03_0057 + 11944973-11947159
          Length = 728

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 136 FRYLGTYFSVISSVIRRWRLCRR 68
           F +LGT FS  S ++ RWR  R+
Sbjct: 18  FEFLGTAFSAASLLLSRWRRRRQ 40


>03_06_0037 + 31222963-31223886,31225172-31225786
          Length = 512

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 90  EGGGCVGGIPTPFASCRFLQPGGSTSL 10
           EGGGC G +  PF   R   PG + +L
Sbjct: 429 EGGGCDGNLSMPFGMGRRRCPGETLAL 455


>02_05_0405 +
           28708077-28708391,28708478-28708573,28709030-28709450,
           28710051-28710141,28710483-28710819,28710905-28711053,
           28711782-28712295
          Length = 640

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +2

Query: 68  PPTQPPPSDNTANNRKICSKIPKHQVCTMDRAQIINGALESKELRSDTY 214
           PPT P P+      RK+ +  P+      D   +  GA   K++ +  +
Sbjct: 54  PPTPPAPAPAAEEKRKVRNDHPRTSAAGFDPEALERGAAMLKQIENSPH 102


>01_01_0189 -
           1640581-1640832,1640936-1641132,1641243-1641608,
           1641826-1642224,1642313-1642719,1642814-1642941
          Length = 582

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 134 KHQVCTMDRAQIINGALESKELRSDTYELVRLRRCLR 244
           K +  +MD+  +I     +K+ +S   +L R RRCLR
Sbjct: 479 KRRTSSMDQTLVITLKKANKKKKSRLKDLTRPRRCLR 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,211,550
Number of Sequences: 37544
Number of extensions: 266457
Number of successful extensions: 922
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)