Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0132
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z98877-1|CAB11569.2|  343|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +2

Query: 8    SKLVDPPG-----CRNRHEAKGVGIPPTQPPPSDNTANNRKICSKIPKHQVCTMDRAQII 172
            +K V+ PG     C N     G    PT   P D+T +++  CS+   +  C +D    +
Sbjct: 1508 AKCVNKPGTYSCECENGFLGDGYQCVPTTKKPCDSTQSSKSHCSE--SNMSCEVD---TV 1562

Query: 173  NGALESKE 196
            +G++E KE
Sbjct: 1563 DGSVECKE 1570


>Z98877-1|CAB11569.2|  343|Caenorhabditis elegans Hypothetical
           protein Y69H2.1 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 178 PIYYLSSVHSTYLMFRYLGTYFSVI-SSVIRRWRLCRRYSYSLCLVPI 38
           P Y LS+  + YL+F     Y SV+  S++R + L    S  L  VPI
Sbjct: 96  PFYLLSTWQTMYLLFGKAPEYPSVLHCSLLRHFVLACFQSAGLITVPI 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,555,043
Number of Sequences: 27780
Number of extensions: 235773
Number of successful extensions: 745
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)