Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0132
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   5.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.5  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 54  FASCRFLQPGGS 19
           +A C FL PGGS
Sbjct: 65  YAKCEFLNPGGS 76


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +2

Query: 20  DPPGCRNRHEAKGVG-IPPTQ 79
           +P  CR RHE +    IP TQ
Sbjct: 518 EPSACRPRHEIRSTDVIPGTQ 538


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 68  PPTQPPPSDNTANNRKICSKIPKHQVCTMDRAQII 172
           PP Q PPS   +  R+       + V  +DRA  I
Sbjct: 395 PPRQTPPSRKESGRRRRRRTPRYNSVSKIDRASRI 429


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 447 CC*HLYKQVI*NI*LRINLAFYFLFLFV 364
           CC   Y  ++ NI LR    FY + L +
Sbjct: 218 CCEEPYPDIVFNITLRRKTLFYTVNLII 245


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 450 QCC*HLYKQVI*NI*LRINLAFYFLFLFV 364
           QCC   Y  V   I +R    +YF  L V
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYYFFNLIV 203


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 450 QCC*HLYKQVI*NI*LRINLAFYFLFLFV 364
           QCC   Y  V   I +R    +YF  L V
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYYFFNLIV 203


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 450 QCC*HLYKQVI*NI*LRINLAFYFLFLFV 364
           QCC   Y  V   I +R    +YF  L V
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYYFFNLIV 203


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 450 QCC*HLYKQVI*NI*LRINLAFYFLFLFV 364
           QCC   Y  V   I +R    +YF  L V
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYYFFNLIV 203


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 450 QCC*HLYKQVI*NI*LRINLAFYFLFLFV 364
           QCC   Y  V   I +R    +YF  L V
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYYFFNLIV 203


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 450 QCC*HLYKQVI*NI*LRINLAFYFLFLFV 364
           QCC   Y  V   I +R    +YF  L V
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYYFFNLIV 203


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 450 QCC*HLYKQVI*NI*LRINLAFYFLFLFV 364
           QCC   Y  V   I +R    +YF  L V
Sbjct: 243 QCCPEPYVDVTFTIQIRRRTLYYFFNLIV 271


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 450 QCC*HLYKQVI*NI*LRINLAFYFLFLFV 364
           QCC   Y  V   I +R    +YF  L V
Sbjct: 243 QCCPEPYVDVTFTIQIRRRTLYYFFNLIV 271


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 447 CC*HLYKQVI*NI*LRINLAFYFLFLFV 364
           CC   Y  +  NI LR    FY + L V
Sbjct: 217 CCDEPYPDIFFNITLRRKTLFYTVNLIV 244


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -1

Query: 480 IPTGFWYEILQCC*HLYKQVI*NI*LRINLAFYFLFLFV 364
           +P     E   CC   Y  +  NI +R    FY + L +
Sbjct: 220 VPASRNEEYYPCCTEPYSDITFNITMRRKTLFYTVNLII 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,502
Number of Sequences: 438
Number of extensions: 2905
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)