Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0132
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR...    30   0.77 
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t...    25   2.3  
At5g11610.2 68418.m01356 exostosin family protein contains Pfam ...    29   2.4  
At5g11610.1 68418.m01355 exostosin family protein contains Pfam ...    29   2.4  
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro...    28   4.1  
At5g59290.1 68418.m07429 UDP-glucuronic acid decarboxylase (UXS3...    27   5.4  
At2g19340.2 68415.m06035 membrane protein, putative contains 3 t...    27   5.4  
At2g19340.1 68415.m06034 membrane protein, putative contains 3 t...    27   5.4  
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family...    27   5.4  
At4g30070.1 68417.m04277 plant defensin-fusion protein, putative...    27   7.2  
At3g63010.1 68416.m07078 expressed protein similar to PrMC3 [Pin...    27   7.2  
At4g34900.1 68417.m04949 xanthine dehydrogenase, putative simila...    27   9.5  
At3g01890.1 68416.m00135 SWIB complex BAF60b domain-containing p...    27   9.5  

>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1183

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 131 PKHQVCTMDRAQIINGALESKELRSDTYELVRLRRCLRDQA*PLNLSESLFRTH 292
           P H +  +   Q + G + + +L SD Y L R  + L   A PL +   +FR H
Sbjct: 550 PMHNLTFLKFFQHLGGNVSNLQLISDDYVLSRNLKLLHWDAYPLTILPPIFRPH 603


>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 334

 Score = 24.6 bits (51), Expect(2) = 2.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 23  PPGCRNRHEAKGVGIPPTQPPPS 91
           PP   + H    +  PPT+PPPS
Sbjct: 104 PPTKPHPHPKPPIVKPPTKPPPS 126



 Score = 22.6 bits (46), Expect(2) = 2.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 68  PPTQPPPSDNTANNRKICSKIPK 136
           PPT+PPPS       K     PK
Sbjct: 130 PPTKPPPSTPKPPTTKPPPSTPK 152


>At5g11610.2 68418.m01356 exostosin family protein contains Pfam
           domain, PF03016: Exostosin family
          Length = 453

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 247 ITKTASQTH*FVCIRPKFLRLQSPIYYLSSVHSTYLMFRYLGTYFSVISSVIRRW-RLC 74
           +TK  ++ H F    P   R+     Y+   HS   + +YLG Y  +I+S    W R C
Sbjct: 261 LTKDPTKAHLFYI--PFSSRILQQKLYVHDSHSRNNLVKYLGNYIDLIASNYPSWNRTC 317


>At5g11610.1 68418.m01355 exostosin family protein contains Pfam
           domain, PF03016: Exostosin family
          Length = 546

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 247 ITKTASQTH*FVCIRPKFLRLQSPIYYLSSVHSTYLMFRYLGTYFSVISSVIRRW-RLC 74
           +TK  ++ H F    P   R+     Y+   HS   + +YLG Y  +I+S    W R C
Sbjct: 261 LTKDPTKAHLFYI--PFSSRILQQKLYVHDSHSRNNLVKYLGNYIDLIASNYPSWNRTC 317


>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
           protein similar to mavicyanin SP:P80728 from [Cucurbita
           pepo]
          Length = 310

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 23  PPGCRNRHEAKGVGIPPTQPPPSDNTANNRKICSKIP 133
           PP     HE      PP  PPPS     +R+I    P
Sbjct: 140 PPPPSKTHEPSRPNTPPPPPPPSKTHEPSRRITPSPP 176


>At5g59290.1 68418.m07429 UDP-glucuronic acid decarboxylase (UXS3)
           identical to UDP-glucuronic acid decarboxylase
           [Arabidopsis thaliana] GI:14595666; contains Pfam
           profile PF01370 NAD dependent epimerase/dehydratase
           family; identical to cDNA  UDP-glucuronic acid
           decarboxylase (UXS3) GI:14595665
          Length = 342

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 74  TQPPPSDNTANNRKICSKIPKHQVCTMDRAQIINGALESKELRSDTYELV 223
           T+PPPS +   N K C   P  ++     A  I   L  K + ++  E+V
Sbjct: 11  TKPPPSPSPLRNSKFCQ--PNMRILISGGAGFIGSHLVDKLMENEKNEVV 58


>At2g19340.2 68415.m06035 membrane protein, putative contains 3
           transmembrane domains;
          Length = 173

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 217 FVCIRPKFLRLQSPIYYLSSVHSTYLMFRYLGTYFSVISSVI 92
           F  +RP  LRL+ P + L S  + Y +   L TYF V+S  +
Sbjct: 34  FSFLRPPRLRLKIPSFTLPSPMTVYALI--LLTYFLVVSGFV 73


>At2g19340.1 68415.m06034 membrane protein, putative contains 3
           transmembrane domains;
          Length = 200

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 217 FVCIRPKFLRLQSPIYYLSSVHSTYLMFRYLGTYFSVISSVI 92
           F  +RP  LRL+ P + L S  + Y +   L TYF V+S  +
Sbjct: 34  FSFLRPPRLRLKIPSFTLPSPMTVYALI--LLTYFLVVSGFV 73


>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 554

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 23  PPGCRNRHEAKGVGIPPTQPPPSDNTANNRKICSKIPKHQVCTMDRAQIINGALESK--E 196
           PP        KGV  PP  PP +      +K+ SK+ K         + + G LE K  E
Sbjct: 261 PPPPLPMAAGKGVAAPPPPPPGARGGLGAKKVTSKL-KRSTHLGALFRFLKGKLEGKNPE 319

Query: 197 LRS 205
           +RS
Sbjct: 320 VRS 322


>At4g30070.1 68417.m04277 plant defensin-fusion protein, putative
           contains a C-terminal plant defensin domain, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be)
          Length = 129

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 17  VDPPGCRNRHEAKGVGIPPTQPPPSDNTANNRKICSKIPKHQVCTMDRAQ 166
           V  P C+  +E +    PP+ P P         ICS+  + Q C M+ AQ
Sbjct: 59  VGVPLCKCYYECES---PPSPPAPPKKCDGGAGICSQRCQGQCCDMNCAQ 105


>At3g63010.1 68416.m07078 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 358

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 317 NIDVSKFCN--VF*TNFPID*GVRLDHEDSVANALIRMY 207
           N D+++F +  V   +FP+D     DH DS  N L R+Y
Sbjct: 42  NRDLAEFLDRKVPANSFPLDGVFSFDHVDSTTNLLTRIY 80


>At4g34900.1 68417.m04949 xanthine dehydrogenase, putative similar
           to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
           [SP|P47990], from Calliphora vicina [SP|P08793];
           contains Pfam profile PF02738 Aldehyde oxidase and
           xanthine dehydrogenase, molybdopterin binding domain
          Length = 1364

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 76  CRRYSYSLCLVPIPAARGIH 17
           CR Y+ + CL P+ +  G+H
Sbjct: 78  CRHYAVNACLAPLYSVEGMH 97


>At3g01890.1 68416.m00135 SWIB complex BAF60b domain-containing
           protein similar to brahma associated protein 60 kDa
           [Drosophila melanogaster] GI:3378134, SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
           profile PF02201: BAF60b domain of the SWIB complex
          Length = 458

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 17  VDPPGCRNRHEAKGVGIPPTQPPPSDNTANNRKICSKIP 133
           +  PG R  H+   +G PP  PP  + T  +RK   K+P
Sbjct: 50  ISAPGRRFPHKPP-IGGPPAVPPSMELTPASRKKKHKLP 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,674,458
Number of Sequences: 28952
Number of extensions: 210817
Number of successful extensions: 480
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)