Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0131
         (511 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2HZF9 Cluster: Yellow8; n=1; Bombyx mori|Rep: Yellow8 ...   118   6e-26
UniRef50_Q2HZG1 Cluster: Yellow-f2; n=1; Bombyx mori|Rep: Yellow...   100   4e-20
UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    46   5e-04
UniRef50_Q2HZG3 Cluster: Yellow-fb; n=1; Bombyx mori|Rep: Yellow...    46   7e-04
UniRef50_Q4UFK8 Cluster: Putative uncharacterized protein; n=1; ...    36   0.71 
UniRef50_A2FIZ5 Cluster: Putative uncharacterized protein; n=4; ...    36   0.71 
UniRef50_A0DFF6 Cluster: Chromosome undetermined scaffold_49, wh...    34   1.6  
UniRef50_Q4N7R2 Cluster: Putative uncharacterized protein; n=2; ...    34   2.2  
UniRef50_A3K0U6 Cluster: Putative uncharacterized protein; n=1; ...    32   8.7  
UniRef50_Q59MJ3 Cluster: Putative uncharacterized protein; n=1; ...    32   8.7  

>UniRef50_Q2HZF9 Cluster: Yellow8; n=1; Bombyx mori|Rep: Yellow8 -
           Bombyx mori (Silk moth)
          Length = 273

 Score =  118 bits (285), Expect = 6e-26
 Identities = 50/77 (64%), Positives = 65/77 (84%), Gaps = 1/77 (1%)
 Frame = +3

Query: 111 CVRNKYKRSRQWKLFGYNIDGVIYTSDSDFEHKRGSFTFKDELLEDHEKILIRKNLVPNH 290
           CVR KY+R+  W+LFGY+IDGVIYT+DSD+EHK GS  F+DE+LE+HEK LI+KNLVPNH
Sbjct: 17  CVRIKYERTHYWRLFGYDIDGVIYTTDSDYEHKNGSILFRDEILEEHEKFLIQKNLVPNH 76

Query: 291 INYLFRT-IIPIPRTRP 338
           + + + + I+ IPRTRP
Sbjct: 77  VAFNYNSVIVSIPRTRP 93


>UniRef50_Q2HZG1 Cluster: Yellow-f2; n=1; Bombyx mori|Rep: Yellow-f2
           - Bombyx mori (Silk moth)
          Length = 284

 Score = 99.5 bits (237), Expect = 4e-20
 Identities = 45/72 (62%), Positives = 57/72 (79%), Gaps = 1/72 (1%)
 Frame = +3

Query: 126 YKRSRQWKLFGYNIDGVIYTSDSDFEHKRGSFTFKDELLEDHEKILIRKNLVP-NHINYL 302
           +K  R WKLF Y+IDGV YT+DSD+E+K G+F F++  LEDHEK LIR+NL+P N I+ +
Sbjct: 21  FKYERSWKLFSYDIDGVKYTNDSDYEYKEGTFQFQNVALEDHEKFLIRQNLIPYNFIDDV 80

Query: 303 FRTIIPIPRTRP 338
            RTII IPRTRP
Sbjct: 81  IRTIISIPRTRP 92


>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 46.0 bits (104), Expect = 5e-04
 Identities = 24/61 (39%), Positives = 35/61 (57%)
 Frame = +3

Query: 327 RTRPESYSDQIHSSEIAQRISELKLQWTGRI*CRSDNRQER*VLQWKLLTG*SNVSRSTT 506
           R R E    +   ++IA+RI+++K QW G I  R+D R  R VL+W+   G  +V R  T
Sbjct: 399 RIRNEEIRRRTRVTDIARRIAKIKWQWAGHIARRADGRWGRKVLEWRPRAGRRSVGRPPT 458

Query: 507 R 509
           R
Sbjct: 459 R 459


>UniRef50_Q2HZG3 Cluster: Yellow-fb; n=1; Bombyx mori|Rep: Yellow-fb
           - Bombyx mori (Silk moth)
          Length = 418

 Score = 45.6 bits (103), Expect = 7e-04
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
 Frame = +3

Query: 99  CGTNCVRNKYKRSRQWKLFGYNIDGVIYTSDSDFEHKRGSFTFKDELLEDHEKILIRKNL 278
           C       K K+   WK  GY+ +G  Y  D+D     G+  F  E L D EK  I+ N 
Sbjct: 19  CNVYIGNGKMKQLYAWKQLGYDFNGTKYIKDADRIRSPGAIHFVQE-LGDSEKFFIQYNN 77

Query: 279 VPNHINYLFRTI-IPIPRTR---PE--SYSDQIHSSEI 374
           VP  I ++   + + +PR R   P   +Y D+ HS ++
Sbjct: 78  VPTGIKFVGDLLFLTVPRRRLGIPSTLNYIDRRHSKKL 115


>UniRef50_Q4UFK8 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 185

 Score = 35.5 bits (78), Expect = 0.71
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +3

Query: 222 TFKDELLEDHEKILIRKNLVPNHINYL 302
           TF DEL++ H+ IL+R N++ NH+N L
Sbjct: 112 TFYDELVKTHDLILLRTNILNNHLNKL 138


>UniRef50_A2FIZ5 Cluster: Putative uncharacterized protein; n=4;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 322

 Score = 35.5 bits (78), Expect = 0.71
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 147 KLFGYNIDGVIYTSDSDFEHKRGSFTFKDELLE-DHEKILIRKNLVPNHINYLFRTIIPI 323
           +LF Y+ID ++Y    D   +   FTFKD+ L    EKI I + +   ++N+    I+ I
Sbjct: 140 ELFYYDIDRILYFDWGDTHFQSDPFTFKDKSLHVSDEKIKIMQEIF--NLNW----ILEI 193

Query: 324 PRTRPESYSD 353
              RPE + D
Sbjct: 194 NNLRPEYFGD 203


>UniRef50_A0DFF6 Cluster: Chromosome undetermined scaffold_49, whole
            genome shotgun sequence; n=3; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_49, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2835

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
 Frame = +3

Query: 231  DELLEDHEKILIRKN-LVPNHINYLFRTIIPIPRTRPESYSDQIHSSEIAQ-RISE 392
            +++L D  K++ +K+  +P ++NYLF +++P+     E   + + SSE  Q +ISE
Sbjct: 1663 NKILTDEHKVIKQKDQFIPQNLNYLFDSLLPVVNRYNELLQNALLSSEKDQHQISE 1718


>UniRef50_Q4N7R2 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 696

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 23/59 (38%), Positives = 30/59 (50%)
 Frame = +3

Query: 105 TNCVRNKYKRSRQWKLFGYNIDGVIYTSDSDFEHKRGSFTFKDELLEDHEKILIRKNLV 281
           TNC+ +K +    WKL G N D +   SDS FE  R  F F  E +E  E     KN++
Sbjct: 495 TNCLLDKEQHWINWKLNGCN-DELEPISDSKFELVRSEFNFFPEDVELDEPETEDKNVL 552


>UniRef50_A3K0U6 Cluster: Putative uncharacterized protein; n=1;
           Sagittula stellata E-37|Rep: Putative uncharacterized
           protein - Sagittula stellata E-37
          Length = 1229

 Score = 31.9 bits (69), Expect = 8.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 294 NYLFRTIIPIPRTRPESYSDQIHSSEIAQRISELKLQWTGRI*CRSD 434
           NY   T +P+PR R  SY DQ    ++ QR+    L+  G + C  D
Sbjct: 521 NYALTTSVPMPRVRRLSYRDQTPEDDL-QRLLTGMLESNGAVICVVD 566


>UniRef50_Q59MJ3 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 230

 Score = 31.9 bits (69), Expect = 8.7
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 198 FEHKRGSFTFKDELLEDHEKIL-IRKNLVPNHINYLFRTIIPIPRTRPESYSDQIHSSEI 374
           +EH +    F+++ L+   +   I K+L+ NHI +L      + R R  +  DQ+ SS+I
Sbjct: 141 WEHNKVFLLFRNQNLDVVGRSHGIDKDLITNHIQFLSNITGRVGRARNTNKVDQLSSSDI 200

Query: 375 AQRISELKLQ 404
                E KL+
Sbjct: 201 VGNKLECKLK 210


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 452,261,023
Number of Sequences: 1657284
Number of extensions: 8182957
Number of successful extensions: 18848
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18846
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30946432294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)