Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0131
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   3.8  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   8.7  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   8.7  

>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 153 FGYNIDGVIYTSDSDFEHKRGSFTFKDELLEDHEK 257
           F    +GVI+  D+DF + RG  T     +  HE+
Sbjct: 324 FTCGCEGVIHYMDADFVNYRGEITTIKNAISIHEE 358


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 147 KLFGYNIDGVIYTSDSDFEHKRGSFTFKDELLEDHEKI 260
           KL    I+G  +T+  D  +K  S  F+D +   H  I
Sbjct: 62  KLLRKEIEGSFFTTPKDLVNKIASLCFEDVIDTSHVSI 99


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
 Frame = +3

Query: 120 NKYKRSRQWKLFGYNIDGVIYTSDSDFEH-KRGSFTFKDELLEDHEKILIRKNLVPNHIN 296
           + Y     W  + Y+    + +  +D +  +R S  F +  L  H         +PN ++
Sbjct: 182 HSYNVVNGWYSYCYHSLNKLQSKKTDLDDDERSSVEFYEHCLNHHGNTYPENLTIPNALD 241

Query: 297 YLFRTIIPIPRTRPESYSDQIH 362
           +LF   +      P +   +IH
Sbjct: 242 FLFMPSLCYQLYYPRTAHVRIH 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,422
Number of Sequences: 5004
Number of extensions: 36595
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)