Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0131
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1096 + 23931862-23931931,23932406-23932549,23932888-239329...    27   6.6  
05_05_0272 - 23738514-23738817,23739382-23740748                       27   8.8  
03_03_0041 - 14007687-14009381                                         27   8.8  

>07_03_1096 +
           23931862-23931931,23932406-23932549,23932888-23932986,
           23933422-23933498,23933813-23933921,23934973-23935301,
           23935838-23935930
          Length = 306

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 492 LHYFNRSAVSIAELIFPDGYRFCIRYDQSIAT*AHLCVELSLTNEFDPNTIQA 334
           +HYF+   +++  L   D   FC   D+ ++   HL   L L  E D   + A
Sbjct: 46  IHYFDDGPLTVQYLFVLDALNFCFWPDKDLSY-DHLASGLKLALEKDKTALDA 97


>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 273 NLVPNHINYLFRTIIPIPRTRPESYSDQIH 362
           ++VPN I   FRT I I    PE   D +H
Sbjct: 417 HVVPNVITAEFRTFIEIIFENPEKSMDSVH 446


>03_03_0041 - 14007687-14009381
          Length = 564

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 147 KLFGYNIDGVIYTSDSDFEHKRGSFTFKDELLEDHEKILIRKNLVPNHINY 299
           KL GYN+D V YT+  D   K G      ++  +    ++ K + PN   Y
Sbjct: 282 KLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNE----MVDKGMEPNEYAY 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,754,449
Number of Sequences: 37544
Number of extensions: 209887
Number of successful extensions: 423
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)