Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0131
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 147 KLFGYNIDGVIYTSDSDFEHKRGSFTFKDELLEDHEKILIR 269
           K F Y     I++SD+D     G F    + LED  +I ++
Sbjct: 163 KHFNYMKVIFIHSSDTDGRALLGRFQTTSQNLEDDVEIKVQ 203


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 42 CRFLQPGGS 16
          C FL PGGS
Sbjct: 68 CEFLNPGGS 76


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 180 YTSDSDFEHKRGSFT 224
           YT+D   E+  G+FT
Sbjct: 187 YTTDCTIEYSTGNFT 201


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +3

Query: 279 VPNHINYLFRTIIPIPRTRPESYSDQIHSSEI 374
           VP+ +  LF     I   RP +++D+++ + +
Sbjct: 615 VPDSVELLFINNNYINLVRPNTFTDKVNLTRV 646


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,268
Number of Sequences: 438
Number of extensions: 2851
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)