Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0131
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51730.1 68414.m05829 RWD domain-containing protein contains ...    27   7.3  
At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containi...    27   9.7  
At4g30120.1 68417.m04282 ATPase E1-E2 type family protein / heav...    27   9.7  
At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR...    27   9.7  
At2g04305.1 68415.m00423 magnesium transporter CorA-like protein...    27   9.7  

>At1g51730.1 68414.m05829 RWD domain-containing protein contains
           Pfam profile PF05773: RWD domain; similar to GCN2
           eIF2alpha kinase (GI:6066585) [Mus musculus]; similar to
           GCN2beta (GI:10764163) [Mus musculus]; similar to RING
           finger protein 25 (RING finger protein AO7)
           (Swiss-Prot:Q9QZR0) [Mus musculus]; similar to RING
           finger protein 25 (Swiss-Prot:Q96BH1) [Homo sapiens]
          Length = 252

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 117 RNKYKRSRQWKLFGYNIDGVIYTSDSDFEHKRGSFTFKDELLEDHEKILIRKNL 278
           + K    RQW   G     V+   + D E       F+DE  ED E+ ++   L
Sbjct: 186 KEKKLTGRQWFESGRGRGTVVIADEEDEEEDEEDIDFEDEDFEDDEEDMLEHYL 239


>At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 907

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 156 GYNIDGVIYTSDSDFEHKRGSFTFKDELLEDHEKILIRKNLVPNHINY 299
           G   D VIYTS  D + K G F     + +    ++I +  VPN + Y
Sbjct: 677 GLKPDDVIYTSMIDAKSKTGDFKEAFGIWD----LMINEGCVPNEVTY 720


>At4g30120.1 68417.m04282 ATPase E1-E2 type family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux ATPase [Streptococcus thermophilus]
           GI:22416341; contains Pfam profile PF00122: E1-E2 ATPase
          Length = 542

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 506 SC*ATYITLTGQQFPLQNSSFLTVIASASDTTSPLQLKLT 387
           SC     TLTG+ FP+      TV+A+  +    +++K T
Sbjct: 240 SCDVDEKTLTGESFPVSKQRESTVMAATINLNGYIKVKTT 279


>At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein. A false
            intron was added between exons 2 and 3 to circumvent a
            frameshift caused by a sequencing error, as per Blake
            Meyers (bcmeyers@vegmail.ucdavis.edu)
          Length = 1308

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 335  PCPRNRYYCTKEIVDVVRN 279
            PC R+R + +K+IVDV+ N
Sbjct: 1045 PCERSRLWDSKDIVDVLTN 1063


>At2g04305.1 68415.m00423 magnesium transporter CorA-like
           protein-related
          Length = 434

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = +3

Query: 195 DFEHKRGSFTFKDELLEDHEKILIRKNL-----VPNHINYLFRTIIPIPRTRPESYSDQI 359
           + E  RG F  K ++L+D     +  NL     V  H   +F  +     T+P   ++ I
Sbjct: 228 ELEMDRGGFAMKKKMLDDRRFPKLHLNLQRLLQVIAHGEQVFPRVKEKCSTKPWFLAEDI 287

Query: 360 HS-SEIAQRISELK 398
           HS  E+  R+  LK
Sbjct: 288 HSLEELIGRLRRLK 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,725,281
Number of Sequences: 28952
Number of extensions: 181446
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)