Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0129
         (654 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated...    31   2.7  
AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein pr...    31   2.7  
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ...    31   2.7  
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc...    31   2.7  
BC099906-1|AAH99906.1|  400|Homo sapiens RNPEPL1 protein protein.      31   4.7  

>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
           repressor protein (SHARP) protein.
          Length = 3664

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 309 RDYPTLNRHRRRRWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFR 449
           RDYP   R     W+   G DY   R+Y + R+Y   + D   Q  R
Sbjct: 648 RDYPARGREFYSEWETYQG-DYYESRYYDDPREYRDYRNDPYEQDIR 693


>AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein
           protein.
          Length = 3261

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 309 RDYPTLNRHRRRRWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFR 449
           RDYP   R     W+   G DY   R+Y + R+Y   + D   Q  R
Sbjct: 245 RDYPARGREFYSEWETYQG-DYYESRYYDDPREYRDYRNDPYEQDIR 290


>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
           repressor protein (SHARP) protein.
          Length = 3664

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 309 RDYPTLNRHRRRRWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFR 449
           RDYP   R     W+   G DY   R+Y + R+Y   + D   Q  R
Sbjct: 648 RDYPARGREFYSEWETYQG-DYYESRYYDDPREYRDYRNDPYEQDIR 693


>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
           transcription cofactor protein.
          Length = 3664

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 309 RDYPTLNRHRRRRWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFR 449
           RDYP   R     W+   G DY   R+Y + R+Y   + D   Q  R
Sbjct: 648 RDYPARGREFYSEWETYQG-DYYESRYYDDPREYRDYRNDPYEQDIR 693


>BC099906-1|AAH99906.1|  400|Homo sapiens RNPEPL1 protein protein.
          Length = 400

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 496 PHHRSQFTFHTQCPITCLNT-FRVMSTRQRSRTLNKDSPIWKTRTKI 633
           PH  S    H     TCL T FR+ +  ++ + L +DSP+ K + K+
Sbjct: 56  PHLSSVSGPHPGAAFTCLETAFRLDALHRQMKLLGEDSPVSKLQVKL 102


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,997,530
Number of Sequences: 237096
Number of extensions: 1553255
Number of successful extensions: 9826
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9826
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)