Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0129
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.4  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   4.5  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   6.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   6.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 50 ASCRFLQPGGS 18
          A C FL PGGS
Sbjct: 66 AKCEFLNPGGS 76


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 493 RPHHRSQFTFHTQCPITCLNT 555
           R  H S F   T+ P TC  T
Sbjct: 183 RNSHESXFVVPTRVPATCCTT 203


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 305 RKRLPDPKQTP 337
           R  LPDPK+TP
Sbjct: 201 RGMLPDPKKTP 211


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 305 RKRLPDPKQTP 337
           R  LPDPK+TP
Sbjct: 201 RGMLPDPKKTP 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,720
Number of Sequences: 438
Number of extensions: 3157
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)