Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0129
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09700.1 68417.m01594 hypothetical protein similar to zinc fi...    31   0.51 
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    29   2.0  
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    29   2.0  
At3g42180.1 68416.m04335 exostosin family protein contains Pfam ...    28   6.2  
At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00...    28   6.2  
At5g47450.1 68418.m05853 major intrinsic family protein / MIP fa...    27   8.2  
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ...    27   8.2  

>At4g09700.1 68417.m01594 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 371

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +3

Query: 288 QSDFKKERDYPTLNRHRRRRWQLNYG------YDYQPPRHYTERRDYYQNQQDLIP 437
           +SD +++ DYP+   HR R  + ++        DY  P  Y  RRD  ++  DL P
Sbjct: 278 RSDHREKSDYPSAYSHRHREPRRDFSPQDCSRRDYSRPASYNFRRDSVRSGFDLHP 333


>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 348 WQLNYGYDYQPPRHYTERRDYYQNQQDLIPQ 440
           +Q   GY   PP  Y +R +Y QN Q    Q
Sbjct: 24  YQSRSGYQQHPPPQYVQRGNYAQNHQQQFQQ 54


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 348 WQLNYGYDYQPPRHYTERRDYYQNQQDLIPQ 440
           +Q   GY   PP  Y +R +Y QN Q    Q
Sbjct: 24  YQSRSGYQQHPPPQYVQRGNYAQNHQQQFQQ 54


>At3g42180.1 68416.m04335 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 425

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 502 HRSQFTFHTQCPITCLNTFRVMSTRQRSRTLNKDSPI 612
           +R+ F FH Q  I  + TF+V S ++  + L  D P+
Sbjct: 72  YRNSFAFH-QSHIEMMKTFKVWSYKEGEQPLVHDGPV 107


>At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 389

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 389 LYRKKRLLSKPTGSDPSDI 445
           +YR++RL SKPT S P D+
Sbjct: 11  VYRRRRLQSKPTSSFPLDL 29


>At5g47450.1 68418.m05853 major intrinsic family protein / MIP
           family protein contains Pfam profile: MIP PF00230
          Length = 250

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 640 NPQFWFVSSISGNLCLMSGFFVWL 569
           NP      +I GN+ L++GFF W+
Sbjct: 83  NPAVTLGLAIGGNITLITGFFYWI 106


>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
            SP|Q07283 Trichohyalin {Homo sapiens}
          Length = 1400

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 345  RWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFRLLDELAVEVRR 482
            R+Q ++G + + P+ YT R + +Q   D +    R+ + L  EV+R
Sbjct: 1271 RYQDSHGTEGESPQRYTSRLERHQRTADRV----RIAETLDTEVKR 1312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,753,702
Number of Sequences: 28952
Number of extensions: 232311
Number of successful extensions: 449
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)