Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0128
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   3.6  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    25   4.8  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   4.8  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   4.8  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    24   6.3  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        24   6.3  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    24   6.3  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   6.3  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +2

Query: 140  IRTPERSTRLHA--LNFNDEFLLLWLLEIVRLNNIFR 244
            I  P   T  H   + FNDEF+ +W     +LN I +
Sbjct: 1189 IGKPNSVTSCHGYLIAFNDEFVEIWNTRTRKLNQIIQ 1225


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 97  PFILCNS-GAFHLGIKMPRAEFLQPGDPLV 11
           PFI  ++ G  H+ +++ RA+F +  DPLV
Sbjct: 327 PFITADATGPKHINMEISRAQFEKLVDPLV 356


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 179 LMRAVAYCVPASVFLFYVINTSILKNTPFYFMQFRSFSF 63
           L   V YC+   + ++ +    I    P    +FRSF+F
Sbjct: 36  LSLTVKYCLAVKLLIYLLYCWYIYSEVPSVSSKFRSFTF 74


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 72  APELHKIKGCVFKNTCIYNIKKEY 143
           A E++K + C F+  C +  KK+Y
Sbjct: 380 AEEVYKCRSCEFQKECWWLKKKQY 403


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 179 LMRAVAYCVPASVFLFYVINTSILKNTPFYFMQFRSFSF 63
           L   V YC+   + ++ +    I    P    +FRSF+F
Sbjct: 36  LSLTVKYCLAVKLLIYLLYCWYIYSEVPSASSKFRSFTF 74


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 179 LMRAVAYCVPASVFLFYVINTSILKNTPFYFMQFRSFSF 63
           L   V YC+   + ++ +    I    P    +FRSF+F
Sbjct: 36  LSLTVKYCLAVKLLIYLLYCWYIYSEVPSASSKFRSFTF 74


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 140 IRTPERSTRLHALNFNDEFL 199
           +RT E STR+HA +F+ + L
Sbjct: 107 LRTMEISTRVHAASFSGKLL 126


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 179 LMRAVAYCVPASVFLFYVINTSILKNTPFYFMQFRSFSF 63
           L   V YC+   + ++ +    I    P    +FRSF+F
Sbjct: 36  LSLTVKYCLAVKLLIYLLYCWYIYSEVPSASSKFRSFTF 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,450,814
Number of Sequences: 5004
Number of extensions: 27354
Number of successful extensions: 56
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)