Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0128
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0028 - 15235520-15235756,15236667-15236888                       30   0.64 
07_01_0960 - 8065206-8066132,8066231-8066659                           29   1.5  
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    29   1.5  
02_05_0710 - 31115116-31115214,31115747-31115851,31116210-311162...    29   1.5  
08_01_0048 + 335868-336682,338382-340386                               26   7.9  

>01_04_0028 - 15235520-15235756,15236667-15236888
          Length = 152

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 278 LSLRHSNCRINEIGIHLLAYNV 343
           ++LR  NCR+ ++G+HL+ Y V
Sbjct: 88  VALRSVNCRLQQVGLHLIIYVV 109


>07_01_0960 - 8065206-8066132,8066231-8066659
          Length = 451

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 348 PRTLYANKCIPISLIRQFE*RKERGGLRHIIIQ 250
           PR  Y N C+P+++    E  + RG L  ++ Q
Sbjct: 300 PRGYYGNVCVPVTVAMPAEALRRRGSLADVVEQ 332


>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 207 GCWKSSD*IIFFDNLELLYDVTLPFLYVTQI 299
           GC + SD I+ FD +++  D T+PF +  +I
Sbjct: 411 GCLQPSDIILSFDGIDIANDGTVPFRHGERI 441


>02_05_0710 -
           31115116-31115214,31115747-31115851,31116210-31116260,
           31116393-31116494,31116651-31116883,31117306-31117497,
           31118142-31118322,31118424-31118623,31119105-31119645
          Length = 567

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 207 GCWKSSD*IIFFDNLELLYDVTLPFLYVTQI 299
           GC + SD I+ FD +++  D T+PF +  +I
Sbjct: 350 GCLQPSDIILSFDGIDIANDGTVPFRHGERI 380


>08_01_0048 + 335868-336682,338382-340386
          Length = 939

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 351 RPRTLYANKCIPISLIRQFE*RKERGGLRHIIIQGYRKILFNL 223
           RPRT+   K I  SL   F+  K   G+R+I+   Y+ +  +L
Sbjct: 380 RPRTMEEWKSIRDSLGAPFDKNKSLEGMRNILNLSYKNLPLHL 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,813,716
Number of Sequences: 37544
Number of extensions: 151421
Number of successful extensions: 223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)