Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0120
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual 52 5e-08
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 33 0.042
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 30 0.29
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual 29 0.39
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 2.7
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 26 3.6
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 26 3.6
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 26 4.8
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 4.8
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 4.8
SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.3
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 25 8.3
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 25 8.3
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 8.3
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po... 25 8.3
>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 52.4 bits (120), Expect = 5e-08
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Frame = +2
Query: 182 EFRDWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYY 361
+ ++ + +P TRY + T ++ L+SP +L + Q Q +R T Y
Sbjct: 8 QIQELLSRIPPVTRYILLGTAATTILTLCQLLSPSMLVLHYPLVVRQKQWYRLFTNYLY- 66
Query: 362 PINPGTGFHFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVCCVIIGLLVKL-PVL 538
GTGF F++N YF Y YS LE +FA Y L+ + L+ L L
Sbjct: 67 ---AGTGFDFIMNIYFFYQYSTYLENFVFARNAKKYIIYLVKVALLIDAFSLISGLGSAL 123
Query: 539 MDPMVLSVLYVWCQLN 586
+ ++ Y W N
Sbjct: 124 NQSLAAAIAYNWSLFN 139
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 32.7 bits (71), Expect = 0.042
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = -3
Query: 464 QLASLQTCRSQVFESSCTKSNSLSGNEILCLDLLDSKTKLLMDAISEI 321
++ L TC + +FES C+++ + N + C+D + K+L++ +I
Sbjct: 1097 KMLDLTTCINGIFESLCSENENTRSNALSCIDHYLNAHKMLLNTTLDI 1144
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 29.9 bits (64), Expect = 0.29
Identities = 16/74 (21%), Positives = 32/74 (43%)
Frame = +1
Query: 211 VFHQILDDFYYCIEFVW*IWACEPLLFYTGFLLFLQSISDMASINSFVLLSNKSRHRISF 390
+ +++L FY IW C+ +FY+ ++F+ S S S+ N+ I
Sbjct: 195 LLNEVLHPFYLFQAVSVLIWLCDSFVFYSCCIVFISSYSIFLSVKESKESENRIHSIIGA 254
Query: 391 PDKLLLFVQLLSKT 432
P + + + +T
Sbjct: 255 PQPVTVIRNQVKQT 268
>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 29.5 bits (63), Expect = 0.39
Identities = 16/81 (19%), Positives = 30/81 (37%)
Frame = +2
Query: 332 WRPLTALFYYPINPGTGFHFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVCCVII 511
WR +T Y + P G ++ FL + LE + + +L W ++
Sbjct: 31 WRAITTFLY--VGP-FGLELILYLSFLLRFMSMLERSSPPPQTQSFLKTVLIVWFSLLVT 87
Query: 512 GLLVKLPVLMDPMVLSVLYVW 574
+P ++LY+W
Sbjct: 88 SYFSYMPFAASYFSFTMLYIW 108
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +2
Query: 296 LDFYYFFNQFQIWRPL----TALFYYPINPGTGFHFLINCYFLYNYSQRLETGMFAGKPA 463
LD++ F+ + W+ L + L+ P N F L+ F+ +Y +FA +
Sbjct: 595 LDYFLLFD-LKFWKRLRGLLSKLYVVPFNRNLLFKRLMGIRFVIHYRSLATAFLFADREP 653
Query: 464 DYFYMLL 484
D+ M L
Sbjct: 654 DHSVMFL 660
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 104 DIYDIVLCNNKSVCANEIIRKSWKMSEFRDWYNG 205
D+Y+ + +N+S +II ++WK +E + + G
Sbjct: 43 DVYNHEIYSNQSAAIPKIIHQTWKTNEIPEKWVG 76
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 476 MLLFNWVCCVIIG-LLVKLPVLMDPMVLSVLYVWC 577
+LLF W+C ++ LLV +P+ + +Y WC
Sbjct: 964 LLLFCWICSTLVTVLLVFVPLSLG----RAIYAWC 994
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 332 WRPLTALFYYPINPGTGFHFLINCYFLYNY 421
W+ L AL PI F+ L+ CY++Y+Y
Sbjct: 446 WKLLVALGMTPIL--YSFYALLCCYYIYSY 473
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 163 KILENVGIPRLVQWCTVFH 219
+ILE G+ + VQWC H
Sbjct: 1095 EILETRGVKKTVQWCEEMH 1113
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +2
Query: 206 VPFFTRYWMTFTIVLSLFGKFGLVS-PYYFI---LDFYYFFNQFQIWRP 340
VP+ TR ++TF+I L+ + G++S P + Y +N IW P
Sbjct: 1173 VPYNTRNFITFSIPRLLYEQGGILSVPGLNTSRGFETKYLYNLMNIWNP 1221
>SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 380 GFHFLINCYFLYNYSQRLETGMFAGKPADYFY 475
GFH LIN YF +Y + + A +DY Y
Sbjct: 10 GFHRLINFYFYPSYHDTVVHNL-AFSTSDYIY 40
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 474 TCFCLIGCAVLSLDYLSNCQY*WT 545
TC+CL+G + ++ DY + W+
Sbjct: 317 TCYCLLGLSSIAYDYRYHTSDGWS 340
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 298 GFLLFLQSISDMASINSFVL--LSNKSRHRISFPDK 399
G +L + SI S+ +F L KS+H+IS P+K
Sbjct: 431 GNVLLMTSIDGFCSVITFEPGELGVKSQHKISLPEK 466
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 446 FAGKPADYFYMLLFNWVCCVIIGLLVKLPVLM 541
+AG +F LF + I+G LV P+L+
Sbjct: 81 YAGVDGYFFIRYLFTFGALCILGCLVLFPILL 112
>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 386 HFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVC 499
HFL+N L +S+++ET ADY ++L + C
Sbjct: 234 HFLLNFGLLLPFSRKMET------EADYIGLMLMSQAC 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,939
Number of Sequences: 5004
Number of extensions: 58452
Number of successful extensions: 184
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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