Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0120
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0709 - 35670153-35670350,35671206-35671259,35672444-356725... 71 5e-13
05_01_0594 - 5337804-5337976,5338282-5338436,5338591-5338745,533... 65 5e-11
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727... 29 3.7
11_03_0226 - 11908455-11908562,11915971-11916240,11916463-119169... 28 4.9
06_03_0501 + 21476715-21476785,21477045-21477786,21478097-214782... 28 4.9
05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868... 28 4.9
05_03_0089 - 8327044-8327142,8327238-8327306,8327413-8327504,832... 28 4.9
08_02_1544 + 27787089-27787172,27787448-27787612,27787741-277878... 27 8.5
>03_06_0709 -
35670153-35670350,35671206-35671259,35672444-35672527,
35672688-35672902,35673959-35674058,35674178-35674276
Length = 249
Score = 71.3 bits (167), Expect = 5e-13
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Frame = +2
Query: 191 DWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPIN 370
+WY +P TR ++T +V ++ ++SPY+ L+ ++IWR +T Y+
Sbjct: 7 EWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYF--- 63
Query: 371 PGTGFHFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVC---CVIIGLLV------ 523
FL + +FL Y + LE F G+ AD+FYMLLF V+IG ++
Sbjct: 64 RKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISET 123
Query: 524 --KLPVLMDPMVLSVLYVWCQLN 586
++ L + + ++YVW + N
Sbjct: 124 FARILFLSNSLTFMMVYVWSKHN 146
>05_01_0594 -
5337804-5337976,5338282-5338436,5338591-5338745,
5338864-5338992,5339096-5339189,5339293-5339366,
5339716-5339851,5341546-5341562
Length = 310
Score = 64.9 bits (151), Expect = 5e-11
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Frame = +2
Query: 176 MSEFRDWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALF 355
MS ++YN +P ++ + T ++ + +++P + L + + F +FQIWR T+ F
Sbjct: 1 MSSPAEYYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFF 60
Query: 356 YYPINPGTGFHFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVCCVIIGLLVKLPV 535
+ +F I + Y +LE G F + AD+ +M++F + + + + L +
Sbjct: 61 FL---GKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLLALSAIPFLDI 117
Query: 536 --LMDPMVLSVLYVW 574
L PMV +LYVW
Sbjct: 118 YFLGVPMVSMLLYVW 132
>12_02_0811 -
23370455-23370472,23372279-23372538,23372645-23372713,
23372979-23373105,23373187-23373422,23373509-23373678,
23373855-23373935,23374013-23374084,23374273-23374344,
23374450-23374588,23375141-23375643,23376817-23377010,
23377952-23378488
Length = 825
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 308 YFFNQFQIWRPLT--ALFYYPINP 373
+ FN++Q WRP + LF YP +P
Sbjct: 226 FAFNRYQFWRPASYYKLFRYPFDP 249
>11_03_0226 -
11908455-11908562,11915971-11916240,11916463-11916946,
11917148-11918060,11918628-11919300
Length = 815
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 419 SCTKSNSLSGNEILCLDLLDSKTK 348
SCTKS +L GN +L ++DS K
Sbjct: 133 SCTKSTNLKGNGLLARRIVDSVAK 156
>06_03_0501 +
21476715-21476785,21477045-21477786,21478097-21478246,
21478350-21478589,21479968-21480048,21480144-21480185,
21480953-21481033,21481271-21481368,21482574-21482667,
21482733-21482861,21483881-21483931,21484023-21484049,
21484280-21484387,21484956-21485201
Length = 719
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 576 HHTYNTESTIGSINTGNLTSNPMITQHTQLNKSM 475
HH NTE TI S+ +GN+ NP + T + +
Sbjct: 585 HHVMNTEHTIISLGSGNM-GNPQQMEGTNYQECL 617
>05_03_0355 -
12885898-12886290,12886351-12886644,12886744-12886871,
12886952-12888482
Length = 781
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 419 SCTKSNSLSGNEILCLDLLDSKTK 348
SCTKS +L GN +L ++DS K
Sbjct: 143 SCTKSTNLKGNGLLARRIVDSVAK 166
>05_03_0089 -
8327044-8327142,8327238-8327306,8327413-8327504,
8327932-8329042
Length = 456
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 455 KPADYFYMLLFNWVCCVIIGLLVKL 529
KPA Y L NW C +IIG+L+ L
Sbjct: 412 KPAKYSLSWLMNW-CFIIIGMLLML 435
>08_02_1544 +
27787089-27787172,27787448-27787612,27787741-27787850,
27788360-27788513,27788643-27788937,27788996-27789798
Length = 536
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 269 GLVSPYYFILDFYYFFNQFQIWRPLTALFYY 361
G + Y F+ ++FF + I +P++ +FY+
Sbjct: 470 GCSAVYLFLYATFFFFAKLSIVKPVSVMFYF 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,974,354
Number of Sequences: 37544
Number of extensions: 318135
Number of successful extensions: 827
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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