Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0120
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)                   33   0.13 
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)                   33   0.17 
SB_55044| Best HMM Match : Ion_trans (HMM E-Value=0.00041)             29   2.8  
SB_1368| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  
SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   6.5  
SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)                 28   6.5  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)                     28   6.5  
SB_29482| Best HMM Match : 7tm_1 (HMM E-Value=6e-07)                   27   8.6  
SB_18818| Best HMM Match : Peptidase_C1 (HMM E-Value=1.1e-39)          27   8.6  

>SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 712

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 19/58 (32%), Positives = 35/58 (60%)
 Frame = -2

Query: 243 IVKVIQYLVKNGTPLYQSRNSDIFQDFLIISLAQTDLLLHSTMS*ISVFRYFRLFSYF 70
           ++++I  ++  G   Y S+  +IF  F+++ L+ T+LLL +  + +SVFR  RL   F
Sbjct: 241 VLEMIINVISFGIMGYLSQLQNIFDGFVVV-LSVTELLLENGYARLSVFRSIRLLRIF 297


>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1457

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 19/58 (32%), Positives = 34/58 (58%)
 Frame = -2

Query: 243 IVKVIQYLVKNGTPLYQSRNSDIFQDFLIISLAQTDLLLHSTMS*ISVFRYFRLFSYF 70
           ++++I  ++  G   Y S+  +IF  F ++ L+ T+LLL +  + +SVFR  RL   F
Sbjct: 498 VLEMIINVISFGIMGYLSQLQNIFDGF-VVGLSVTELLLENGYARLSVFRSIRLLRIF 554


>SB_55044| Best HMM Match : Ion_trans (HMM E-Value=0.00041)
          Length = 855

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +2

Query: 479 LLFNWVCCVIIGLLVKLPVLMDPMVLSVLYV 571
           L ++W+  V+I +L+ L +++ P + +V+Y+
Sbjct: 239 LSYDWLIWVLINMLIPLDMVLFPFIFAVMYL 269


>SB_1368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 469 IVSWLPCKHAGLKSLRVVVQKVTVYQEMKSCAWIYWIVKQSC 344
           +  WLPC HA LK    V  ++   Q M+    +     +SC
Sbjct: 29  LTDWLPCYHAELKGAEDVPNEIWHQQRMRDALILQDPEHESC 70


>SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 350

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 224 YWMTFTIVLSLFGKFGLVS-PYYFILDF 304
           Y+M FT+++  FG  G ++  YY IL F
Sbjct: 167 YYMFFTVIICFFGPLGTMAFCYYKILSF 194


>SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)
          Length = 352

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 446 FAGKPADYFYMLLFNWVCCVIIGLLVKLPVLMDPMVLSVLYVW 574
           F G PADY       +V   ++  L+  P +    V+ +L VW
Sbjct: 17  FIGSPADYTKNFKQTYVSLAVVNALIAAPTIFGNFVI-ILAVW 58


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -1

Query: 283  RAHKPKFTKQTQ--YNSKSHPISG 218
            +++ P  T QTQ  YNS+S+P+SG
Sbjct: 1820 QSYAPSATSQTQTSYNSQSYPVSG 1843


>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 197  YNGVPFFTRYWMTFTIVLSLF 259
            Y  VP F  YW+   ++L LF
Sbjct: 1231 YTIVPIFANYWLAIVVILPLF 1251


>SB_29482| Best HMM Match : 7tm_1 (HMM E-Value=6e-07)
          Length = 354

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 491 WVCCVIIGLLVKLPVLMDPMVLSVL 565
           W+   I+ L V  PV+M PM +SVL
Sbjct: 203 WLLAAILALNVFFPVVMIPMTVSVL 227


>SB_18818| Best HMM Match : Peptidase_C1 (HMM E-Value=1.1e-39)
          Length = 504

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 261 PNKLNTIVKVIQYLVKNGTPLYQSRN 184
           P+ LN  V ++ Y VKNGTP +  +N
Sbjct: 375 PSSLNHGVLIVGYGVKNGTPYWIIKN 400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,964,859
Number of Sequences: 59808
Number of extensions: 397938
Number of successful extensions: 928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)