Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0120
(595 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g21810.1 68417.m03155 Der1-like family protein / degradation ... 71 8e-13
At4g04860.1 68417.m00708 Der1-like family protein / degradation ... 71 8e-13
At4g29330.1 68417.m04191 Der1-like family protein / degradation ... 66 2e-11
At5g22940.1 68418.m02682 exostosin family protein contains Pfam ... 33 0.19
At4g23160.1 68417.m03342 protein kinase family protein contains ... 29 3.1
At3g58460.1 68416.m06516 rhomboid family protein / ubiquitin-ass... 28 5.4
At1g61670.1 68414.m06956 expressed protein similar to membrane p... 28 5.4
At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR... 27 7.1
At2g01390.1 68415.m00056 pentatricopeptide (PPR) repeat-containi... 27 7.1
At5g25100.1 68418.m02974 endomembrane protein 70, putative TM4 f... 27 9.4
At2g27370.1 68415.m03298 integral membrane family protein contai... 27 9.4
>At4g21810.1 68417.m03155 Der1-like family protein / degradation in
the ER-like family protein contains Pfam profile:
PF04511 Der1-like family
Length = 244
Score = 70.5 bits (165), Expect = 8e-13
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Frame = +2
Query: 191 DWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPIN 370
+WY +P TR ++T +V ++ ++SPY L+ Q+Q WR +T Y+
Sbjct: 7 EWYKQMPIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNFLYF--- 63
Query: 371 PGTGFHFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVC---CVIIGLLV------ 523
FL + +FL Y + LE F GK D+ YMLLF V+IG ++
Sbjct: 64 RKMDLDFLFHMFFLARYCKLLEENSFRGKTTDFLYMLLFGATVLTGIVLIGGMIPYLSVS 123
Query: 524 --KLPVLMDPMVLSVLYVWCQLN 586
K+ L + + ++YVW + N
Sbjct: 124 FSKIIFLSNSLTFMMVYVWSKQN 146
>At4g04860.1 68417.m00708 Der1-like family protein / degradation in
the ER-like family protein contains Pfam profile:
PF04511 Der1-like family
Length = 244
Score = 70.5 bits (165), Expect = 8e-13
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Frame = +2
Query: 191 DWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPIN 370
+WY +P TR ++T ++ ++ ++SPY L+ Q+Q WR +T Y+
Sbjct: 7 EWYKQMPIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNFLYF--- 63
Query: 371 PGTGFHFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFN---WVCCVIIGLLV------ 523
F+ + +FL Y + LE F GK AD+ YMLLF V+IG ++
Sbjct: 64 RKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSAS 123
Query: 524 --KLPVLMDPMVLSVLYVWCQLN 586
K+ L + + ++YVW + N
Sbjct: 124 FAKIIFLSNSLTFMMVYVWSKQN 146
>At4g29330.1 68417.m04191 Der1-like family protein / degradation in
the ER-like family protein contains Pfam profile:
PF04511 Der1-like family
Length = 266
Score = 66.1 bits (154), Expect = 2e-11
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 2/135 (1%)
Frame = +2
Query: 176 MSEFRDWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALF 355
MS ++YN +P T+ + T ++ + GLV+P + L QFQIWR +T LF
Sbjct: 1 MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLF 60
Query: 356 YYPINPGTGFHFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVCCVIIGLL--VKL 529
+ G +F I + Y +LE G F + AD+ +M++F +++ ++
Sbjct: 61 FL---GGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVIPFFWT 117
Query: 530 PVLMDPMVLSVLYVW 574
P L +V +LY+W
Sbjct: 118 PFLGVSLVFMLLYLW 132
>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 469
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 235 FYYCIEFVW*IWACEPLLFYTGFLLFLQSISDMASINSFVLLSNKSRHRISFPDKLLL 408
F++ + W +W C L F+T + S+ D +S +S LLSN + S P + L+
Sbjct: 41 FFFRNYYTWILWFCLSLYFFTSYF----SVEDQSSPSSIRLLSN-HKTSSSLPSRALI 93
>At4g23160.1 68417.m03342 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 1262
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = +2
Query: 44 HNDHTIFMXXXXXXXXXXXTDIYDIVLCNNKSVCANEIIRKSWKMSEFRD 193
H+DHT F+ + DI++C+N +E+ + + RD
Sbjct: 263 HSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312
>At3g58460.1 68416.m06516 rhomboid family protein /
ubiquitin-associated (UBA)/TS-N domain-containing
protein contains Pfam profiles PF01694: Rhomboid family,
PF00627: UBA/TS-N domain
Length = 403
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = +2
Query: 155 IIRKSWKMSEFRDWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDF-YYFFNQFQI 331
I+ ++ + W+N +PF T + V+ L +Y + ++FQ+
Sbjct: 5 IVTEAGVQTRVGQWWNAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQV 64
Query: 332 WRPLTALFYYPINPGTGFHFLINCYFLYNYSQRLE 436
+R TA+ ++ G+ H L N L LE
Sbjct: 65 YRFYTAIIFH----GSLLHVLFNMMALVPMGSELE 95
>At1g61670.1 68414.m06956 expressed protein similar to membrane
protein PTM1 precursor isolog GI:1931644 from
[Arabidopsis thaliana]
Length = 513
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 245 VLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYY 361
V L FG +S Y +L +F Q W+ + L Y+
Sbjct: 216 VAPLMNVFGFMSLAYILLGLVWFVRFVQFWKDIIQLHYH 254
>At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1294
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = -2
Query: 282 GLTSPNLPNKLNTIVKVIQYLVKNGTPLYQSRNSDIFQDFLI 157
G T +LPN L+ + + ++YL +G PL ++ S F +FL+
Sbjct: 565 GETRVHLPNGLSYLPRKLRYLRWDGYPL-KTMPSRFFPEFLV 605
>At2g01390.1 68415.m00056 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 577
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 131 NKSVCANEIIRKSWKMSEFRDWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFI 295
N+ + A+ ++K+W F +W + F T+T +L +FG+ G + Y +
Sbjct: 93 NRVLKAHPPMQKAWL---FFNWAAQIKGFKHDHFTYTTMLDIFGEAGRIQSMYSV 144
>At5g25100.1 68418.m02974 endomembrane protein 70, putative TM4
family;
Length = 644
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 269 GLVSPYYFILDFYYFFNQFQIWRPLTALFYY 361
G + Y F+ +YFF + QI + ++A+ Y+
Sbjct: 578 GSSAVYLFLYAAFYFFTKLQITKLVSAMLYF 608
>At2g27370.1 68415.m03298 integral membrane family protein contains
TIGRFAM TIGR01569 : plant integral membrane protein
TIGR01569; contains Pfam PF04535 : Domain of unknown
function (DUF588)
Length = 221
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +1
Query: 277 EPLLFYTGFLLFLQSISDMASINSFVLLSN 366
E L F+T FL F +D+ +++SFV++++
Sbjct: 86 ETLPFFTQFLQFQADYTDLPTMSSFVIVNS 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,216,324
Number of Sequences: 28952
Number of extensions: 280527
Number of successful extensions: 721
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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