Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0119
(490 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 28 0.87
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 3.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 3.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 3.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 3.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 3.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 3.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 3.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 3.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 3.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 3.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 3.5
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 25 8.1
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 27.9 bits (59), Expect = 0.87
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -3
Query: 335 TLISFYLG*LRNTSTYRLRASFKSNSNLNSPRRDIDILTSHFHFCYLIKYKHLNLTP 165
TL+ FY L N + +L+++ + N+ + I L +H ++KY +L P
Sbjct: 1080 TLVEFYDKPLGNEAIRQLKSALWAIGNIGKTDQGITFLINHDTIPLIVKYAENSLIP 1136
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 290 YRLRASFKSNSNLNSPRRDIDILTSHFHFCYLIKYKH 180
Y L+ S +N L+ P + +S FH +L KY+H
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRH 1259
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 290 YRLRASFKSNSNLNSPRRDIDILTSHFHFCYLIKYKH 180
Y L+ S +N L+ P + +S FH +L KY+H
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRH 1259
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 290 YRLRASFKSNSNLNSPRRDIDILTSHFHFCYLIKYKH 180
Y L+ S +N L+ P + +S FH +L KY+H
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRH 1259
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 290 YRLRASFKSNSNLNSPRRDIDILTSHFHFCYLIKYKH 180
Y L+ S +N L+ P + +S FH +L KY+H
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRH 1259
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 290 YRLRASFKSNSNLNSPRRDIDILTSHFHFCYLIKYKH 180
Y L+ S +N L+ P + +S FH +L KY+H
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRH 1259
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 290 YRLRASFKSNSNLNSPRRDIDILTSHFHFCYLIKYKH 180
Y L+ S +N L+ P + +S FH +L KY+H
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRH 1259
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 290 YRLRASFKSNSNLNSPRRDIDILTSHFHFCYLIKYKH 180
Y L+ S +N L+ P + +S FH +L KY+H
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRH 1259
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 290 YRLRASFKSNSNLNSPRRDIDILTSHFHFCYLIKYKH 180
Y L+ S +N L+ P + +S FH +L KY+H
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRH 1259
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 290 YRLRASFKSNSNLNSPRRDIDILTSHFHFCYLIKYKH 180
Y L+ S +N L+ P + +S FH +L KY+H
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRH 1259
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 290 YRLRASFKSNSNLNSPRRDIDILTSHFHFCYLIKYKH 180
Y L+ S +N L+ P + +S FH +L KY+H
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRH 1259
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 290 YRLRASFKSNSNLNSPRRDIDILTSHFHFCYLIKYKH 180
Y L+ S +N L+ P + +S FH +L KY+H
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRH 1259
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 24.6 bits (51), Expect = 8.1
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 366 KQKLSYSNEKAIVTPRTHN 422
KQ + +NEKA VTP++++
Sbjct: 403 KQSIKSANEKAYVTPKSNS 421
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,583
Number of Sequences: 5004
Number of extensions: 27727
Number of successful extensions: 66
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -