Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0119
         (490 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50990.1 68416.m05583 peroxidase, putative similar to peroxid...    29   1.7  
At5g44590.1 68418.m05464 hypothetical protein                          28   3.9  
At5g07380.1 68418.m00845 hypothetical protein                          28   3.9  

>At3g50990.1 68416.m05583 peroxidase, putative similar to peroxidase
           ATP6a [Arabidopsis thaliana] gi|1429215|emb|CAA67310
          Length = 336

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 275 SFKSNSNLNSPRRDIDILTSHFHFCYL 195
           S+ +N+  N PR    IL  HFH C++
Sbjct: 51  SYVANAYFNDPRMAASILRLHFHDCFV 77


>At5g44590.1 68418.m05464 hypothetical protein 
          Length = 349

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 418 WVRGVTIAFSFE-YESFCLTVNSSCMVSI 335
           WV  V I F+FE Y+ FCL   S+C+  I
Sbjct: 108 WVN-VVIVFNFESYQHFCLKDESACLPPI 135


>At5g07380.1 68418.m00845 hypothetical protein 
          Length = 595

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 284 LRASFKSNSNLNSPRRDIDILTSHFHFCYLIK 189
           L+ SF   SNL++    +D LT     CY++K
Sbjct: 21  LKQSFLKLSNLHAISSPVDSLTDRIGLCYILK 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,838,306
Number of Sequences: 28952
Number of extensions: 127265
Number of successful extensions: 224
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)