Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0116
         (363 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)         133   4e-32
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si...   126   4e-30
At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identic...    30   0.40 
At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identic...    30   0.40 
At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identic...    30   0.40 
At4g28730.1 68417.m04109 glutaredoxin family protein contains gl...    27   2.8  
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui...    27   4.9  
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui...    27   4.9  
At5g42580.1 68418.m05184 cytochrome P450 family protein similar ...    26   8.6  
At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative...    26   8.6  

>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
          Length = 92

 Score =  133 bits (321), Expect = 4e-32
 Identities = 58/88 (65%), Positives = 69/88 (78%)
 Frame = +2

Query: 35  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 214
           MAKRTKKVGI GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK  +KR  VGIW CK C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 215 KRTVAGGAWVFSTTAASSCRSAVRRLRE 298
            +  AGGA+  +T +A + RS +RRLRE
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSTIRRLRE 88


>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
           similar to putative 60S ribosomal protein L37a
           GB:AAD28753 [Gossypium hirsutum]
          Length = 92

 Score =  126 bits (304), Expect = 4e-30
 Identities = 56/88 (63%), Positives = 66/88 (75%)
 Frame = +2

Query: 35  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 214
           M KRTKK  I GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR  VGIW CK C
Sbjct: 1   MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 215 KRTVAGGAWVFSTTAASSCRSAVRRLRE 298
            +  AGGA+  +T +A + RS +RRLRE
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSTIRRLRE 88


>At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 545

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 19  GEVYQNGQTYQKGWNYW 69
           G  Y +G+TYQ  W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277


>At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 428

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 19  GEVYQNGQTYQKGWNYW 69
           G  Y +G+TYQ  W+YW
Sbjct: 180 GSCYSSGETYQPRWDYW 196


>At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 516

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 19  GEVYQNGQTYQKGWNYW 69
           G  Y +G+TYQ  W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277


>At4g28730.1 68417.m04109 glutaredoxin family protein contains
           glutaredoxin domain, Pfam:PF00462
          Length = 174

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 65  TGKYGTRYGASLRKMVKKMEVTQHAKYTCSFC 160
           +  +G+R   S+RK V +  V  ++K  CS+C
Sbjct: 62  SSSFGSRMEESIRKTVTENTVVIYSKTWCSYC 93


>At4g38600.2 68417.m05463 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 240 QAPPATVLLHRLQDQMPTQERF 175
           + PP TVL+ +LQ+ + + ERF
Sbjct: 802 KVPPMTVLIQKLQNALSSLERF 823


>At4g38600.1 68417.m05464 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1888

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 240 QAPPATVLLHRLQDQMPTQERF 175
           + PP TVL+ +LQ+ + + ERF
Sbjct: 875 KVPPMTVLIQKLQNALSSLERF 896


>At5g42580.1 68418.m05184 cytochrome P450 family protein similar to
           Cytochrome P450 93A1 (SP:Q42798)  {Glycine max}; similar
           to flavone synthase II (GI:5081817) [Gerbera hybrida].
          Length = 499

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
 Frame = +2

Query: 14  VSERFTKMAKRTKKVG----ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKR 181
           VS RF  + K +   G    +T  YG  Y   ++K++    +  HA         + ++R
Sbjct: 104 VSYRFVPVNKDSLVFGSSGFVTAPYGD-YWKFMKKLISTKLLRPHALELSKGNRAEELRR 162

Query: 182 SCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRR 289
            C+ +    R K +V  G      T    CR ++ R
Sbjct: 163 FCLDLQGKARKKESVEIGKVALKLTNNIICRMSMGR 198


>At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative
           strong similarity to ferredoxin--nitrite reductase
           [Nicotiana tabacum] GI:19893; contains Pfam profiles
           PF03460: Nitrite/Sulfite reductase ferredoxin-like half
           domain, PF01077: Nitrite and sulphite reductase 4Fe-4S
           domain
          Length = 586

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 191 GIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLREV 301
           G +S KRC+  +   AWV +      C++ +   R++
Sbjct: 286 GFFSPKRCEEAIPLDAWVPADDVLPLCKAVLEAYRDL 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,371,910
Number of Sequences: 28952
Number of extensions: 151398
Number of successful extensions: 463
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)