Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0114
         (665 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4UBI9 Cluster: Putative uncharacterized protein; n=3; ...    37   0.50 
UniRef50_O97288 Cluster: Putative uncharacterized protein MAL3P7...    35   2.0  
UniRef50_UPI0000D5607F Cluster: PREDICTED: similar to Katanin p8...    34   2.7  
UniRef50_Q4RQR4 Cluster: Chromosome 2 SCAF15004, whole genome sh...    33   8.2  

>UniRef50_Q4UBI9 Cluster: Putative uncharacterized protein; n=3;
            Theileria|Rep: Putative uncharacterized protein -
            Theileria annulata
          Length = 3913

 Score = 36.7 bits (81), Expect = 0.50
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
 Frame = -3

Query: 360  NQNLFVYYYYLICNKKFEIENTSSLQHSPINKYCTYKTPINYIDNNAE-QNH*IS*LNRK 184
            N+ L V+YY LIC K +  +N  SL  S I      +   + +DN+ E +N+ I+   ++
Sbjct: 1234 NEALIVFYYVLICEKLYN-QNEKSLLFSTIIGSINSQNLNHKVDNSLESKNNRINDKKKR 1292

Query: 183  IYRYNVFFFIYITCTSSA*PPR-EGARESFLDNELYFYKHRT--YIYLCLGKTMNQYIVL 13
            +Y  +     Y+    ++   + E  R+ F+DN  Y+    T   +YL     +N   VL
Sbjct: 1293 LYDIDEVEKSYVELLRASKHFKVEELRQFFVDNNYYWIDGYTDRIVYLVTEALLNGEHVL 1352


>UniRef50_O97288 Cluster: Putative uncharacterized protein MAL3P7.17;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein MAL3P7.17 - Plasmodium falciparum
            (isolate 3D7)
          Length = 806

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
 Frame = -3

Query: 372  LFFGNQNLFVYYYYLICNKKFEIE-----NTSSLQHSPINKYCTYKTPINYIDNNAEQNH 208
            +++ N+NL  Y+++    KK +I+       ++L+++  N +C  K   + I N     +
Sbjct: 652  VYYKNENLQYYFFHSNSTKKKKIQLFIHKTKNNLKNTYNNIFCKEKNNKHNIQNKYNATY 711

Query: 207  *IS*LNRKIYRYNVFFFIYITCTSSA*PPREGARESFLDNELYFYKHRTYIYLCLGKTMN 28
                L+   Y YN   +IYI    +   P      +F D     Y+   Y YL   KT+ 
Sbjct: 712  LNKDLSNNFYPYNEKEYIYINKNKT--NPHNHYYYTFYD---LIYEPPFY-YLKSHKTVQ 765

Query: 27   QYIVLAN 7
             YI+  N
Sbjct: 766  NYIIYIN 772


>UniRef50_UPI0000D5607F Cluster: PREDICTED: similar to Katanin p80
           WD40-containing subunit B1 (Katanin p80 subunit B1) (p80
           katanin), partial; n=1; Tribolium castaneum|Rep:
           PREDICTED: similar to Katanin p80 WD40-containing
           subunit B1 (Katanin p80 subunit B1) (p80 katanin),
           partial - Tribolium castaneum
          Length = 777

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +3

Query: 12  QGRYIGSSFYLNINKYMFYVCRNKVHYQGNSRERPPSVVTRN 137
           Q + +G+SF+L  N  ++ V  NKVH   +S E PPS  T N
Sbjct: 267 QNQLVGASFHLT-NVQVYVVDLNKVHPLNSSTETPPSPFTPN 307


>UniRef50_Q4RQR4 Cluster: Chromosome 2 SCAF15004, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 2 SCAF15004, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 658

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 369 IINRQPRKDKGRCFGQITTEKSCAKLWSQECVANF 473
           ++NRQP  D      Q+T EKS  K W Q C   F
Sbjct: 615 LVNRQPPDDVNGVPNQLTWEKSLWKPWLQPCCGTF 649


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 616,903,691
Number of Sequences: 1657284
Number of extensions: 12393249
Number of successful extensions: 27976
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27963
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)