Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0114
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    28   1.1  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    27   2.4  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   2.4  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   5.6  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   7.4  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   9.8  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   9.8  

>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/52 (23%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -1

Query: 230 TTTQNKIIK*AS*IEKYIGIMFFFLYISRAQVPR--DHRGRALARVSLIMNF 81
           TT +N ++     +   + + F+F+Y+ +  +P+  +++G+  A   LI++F
Sbjct: 352 TTIENGLVYMGILVGSVLTVAFYFIYLRKVMIPKFVENKGKFPAEEILIISF 403


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 535 LNQTAFHPSMCVPEADNLIEMKFATHSCDHNLAQDFSVVI*PKHLPLSF 389
           +++  FH     P+    + M FA H C H L  D   ++ P  L L F
Sbjct: 203 MHRFLFHLDEYTPDHPIFLTMHFAFHGCHHFLPADKYRLVMPPALFLIF 251


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 176 GIMFFFLYISRAQV-PRDHRGRALARVSLIMNFISTNIEHIFIY 48
           G + FFL++++  + PR  RGR  +R  +  NFI++++   + Y
Sbjct: 441 GPVGFFLHLNQQSIIPR--RGRGSSRYEINKNFINSDVPKSYTY 482


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 192 LASLFNDFVLRCCQCN 239
           LA+L N F+L+CC CN
Sbjct: 117 LANLIN-FILKCCGCN 131


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 408 FGQITTEKSC-AKLWSQECVANFISIK 485
           FG   T K+  AK  + EC ANFIS+K
Sbjct: 537 FGPPGTGKTLLAKAIANECSANFISVK 563


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 520 FHPSMCVPEADNLIEMKF-ATHSCDH 446
           FHP  C+   D+ +E  F A ++ DH
Sbjct: 711 FHPEFCIHVIDDTLESLFSAVNNSDH 736


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 1274

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 24 IGSSFYLNINKYMFYVCRNKVH 89
          + ++F  +  +Y F  CRNK H
Sbjct: 5  LNANFNFSFRRYCFVQCRNKYH 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,717
Number of Sequences: 5004
Number of extensions: 56285
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)