Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0114
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812     29   3.3  
01_01_0281 + 2327624-2327694,2327757-2327856                           28   5.8  

>06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812
          Length = 419

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 106 ASALPRWSRGTCARDIYKKKNIIP 177
           A+A+PRW R  C  D++  KN+ P
Sbjct: 370 AAAVPRWRRFCCDEDVWCIKNLNP 393


>01_01_0281 + 2327624-2327694,2327757-2327856
          Length = 56

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 415 RLPRRNPALNYGHKSVWRISFRSSCPLRVHT 507
           RL RR P+  Y  K   + S+R   PLR H+
Sbjct: 12  RLCRRRPSAEYSWKPAAKHSWREDGPLRAHS 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,560,365
Number of Sequences: 37544
Number of extensions: 297587
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)