Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0114
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_51382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -3

Query: 378 C*LFFGN-QNLFVYYYYLICNKKFEIENTSSLQHSPINKYCTYKTPINYIDNNA 220
           C +F  N QN    +Y L+  K   +  T  +      K CT  TP+  + N +
Sbjct: 581 CPIFANNWQNFTSAFYTLVNTKPCPVNETFCILSGSCEKSCTVDTPLKGLSNES 634


>SB_51382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 6   NLQGRYIGSSFYLNINKYMFYVCRNKVHYQ 95
           NLQ  Y+  +F+L INK +   C NKV  Q
Sbjct: 94  NLQHLYVLCNFFLKINK-LLIKCENKVKRQ 122


>SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -2

Query: 475 MKFATHSCDHNLAQDFSVVI*PKHLPLSFRGCLLIIFW*SKSIRVLLL 332
           +KF  H    +L +D +V++  +H+   F+G + II     +++ LL+
Sbjct: 201 IKFGLHKLRESLGRDSNVLMFKRHVANIFKGKVKIILHDKNNLKALLV 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,103,918
Number of Sequences: 59808
Number of extensions: 378163
Number of successful extensions: 729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)