Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0114
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    28   6.8  
AF016668-2|AAO12442.1|  140|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 369 FFGNQNLFVYYYYLICNKKFEIENTSSLQHSPINKYCTYKT 247
           F+ N N    +   + +K + +   S LQ+S   KYCT  T
Sbjct: 488 FYPNSNNCGLFVLCLSSKSYSMSCPSGLQYSASLKYCTTST 528


>AF016668-2|AAO12442.1|  140|Caenorhabditis elegans Hypothetical
           protein F36H9.8 protein.
          Length = 140

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 390 FGVAC*LFFGNQNLFVYYYYLICNKKFEIEN-TSSLQHSPINKYC 259
           F +    FF N + F + +  ICNKK E+EN  ++L  S ++ +C
Sbjct: 60  FSIFLLFFFKNDHRFDFNFS-ICNKKKELENLLAALFRSFLSLFC 103


>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
           protein C44H9.4 protein.
          Length = 1099

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = -2

Query: 577 LTLNDSPVKLQKCHLNQTAFHPS-MCVPEADN----LIEMKFATHSCDH 446
           +T+  + V+LQK ++   +F+   + V +++N    LIE     H CDH
Sbjct: 570 MTIVTAAVELQKKYMRSESFNKQQLLVTQSNNAGVNLIEFALKLHKCDH 618


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,807,618
Number of Sequences: 27780
Number of extensions: 317677
Number of successful extensions: 767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)