Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0114
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62030.1 68414.m06996 DC1 domain-containing protein contains ...    30   1.6  
At1g22882.1 68414.m02857 expressed protein                             29   3.7  
At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase fam...    27   8.5  
At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containi...    27   8.5  

>At1g62030.1 68414.m06996 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 743

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 396 KGRCFGQITTEKSCAKLWSQECVANFISIKLSASG 500
           K RC  +I  E S +K  S  CV  F+S K++ +G
Sbjct: 690 KKRCPHKIVLESSGSKFCSTSCVGYFLSTKVNTAG 724


>At1g22882.1 68414.m02857 expressed protein
          Length = 660

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -1

Query: 635 FTPIEIAEEDFLLGNFFKIFNFK*LSCKVAKMSLKPDSLSPLDVCTRSGQLDRNEIRH 462
           F  +E++EE  +  N  KI NF+  S  + +  L+   + P D     G    + ++H
Sbjct: 306 FVVVELSEETLV--NTIKIANFEHYSSNLKEFELQGTLVYPTDTWVHMGNFTASNVKH 361


>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family
           protein similar to iturin A synthetase C [Bacillus
           subtilis] GI:16040972; contains Pfam profile PF00501:
           AMP-binding enzyme
          Length = 1040

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 321 CKLNNNNTRIDFDYQKIINRQPRKDK--GRCFGQITTEKS-CAKLWSQECVAN 470
           C+ NN+  R+  DY+K   ++ +++K     F QI    S C K+ S E  +N
Sbjct: 607 CEKNNSPKRLKIDYEKFSPKRMKENKLWDSGFSQIQCAFSRCNKVHSPESCSN 659


>At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 706

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -1

Query: 554 KVAKMSLKPDS---LSPLDVCTRSGQLD 480
           K  K+  +PDS   +S L  CT SGQLD
Sbjct: 502 KSLKVGFRPDSVTFISVLTACTHSGQLD 529


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,412,055
Number of Sequences: 28952
Number of extensions: 270718
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)