Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0113
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   2.0  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   6.1  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.1  

>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 155 PIFFKFNVFIFNMIVNS**LI*DDSMYIIFKNTIKISLIPKISSNPNYFYGGEWK 319
           PI   + +    MI++      DDS+Y +F   ++ S+I   S  P+    G W+
Sbjct: 244 PILLSYALSFILMILSHICNSLDDSLYRLFCIYLRFSMIDPTSGFPSSTASGNWE 298


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 65  FYFVVFKFSVYIYTSFFFKY 124
           FYF +F F  +++TS  F +
Sbjct: 112 FYFSLFSFFSFLFTSLHFNF 131


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 83  KFSVYIYTSFFF 118
           KFS+YIY  FFF
Sbjct: 76  KFSIYIYIYFFF 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,593
Number of Sequences: 5004
Number of extensions: 20871
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)