Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0113
         (411 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   29   1.5  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  

>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +2

Query: 65  FYFVVFKFSVY-IYTSF-FFKYHHY*LYKSMLPIFFKFNVFIFNMIV 199
           F FV+F F+ + ++  F FF +  +  + S++ +FF F V++F  +V
Sbjct: 710 FAFVIFVFNAFFVFVVFAFFVFLVFVFFVSVVFVFFVFVVYVFFALV 756


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 65  FYFVVFKFSVYIYTSFFFKYHHY*LY 142
           +Y+  + +  Y Y  +++ YHHY  Y
Sbjct: 111 YYYYYYYYYYYYYYYYYYYYHHYYYY 136


>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 390 NILTVNAIIFQLFKIVNIIFLHLFFHSP 307
           ++L ++    QLF++ N   L +FFH P
Sbjct: 220 DVLDIHCFYSQLFQLYNAYTLFVFFHHP 247


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,095,552
Number of Sequences: 59808
Number of extensions: 113581
Number of successful extensions: 217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)