Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0113
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY533304-1|AAS21306.1|  359|Caenorhabditis elegans BRE-2 protein.      27   7.0  
AL110487-12|CAB54430.2|  308|Caenorhabditis elegans Hypothetical...    27   7.0  
AC006730-2|AAK72091.1|  322|Caenorhabditis elegans Serpentine re...    26   9.2  

>AY533304-1|AAS21306.1|  359|Caenorhabditis elegans BRE-2 protein.
          Length = 359

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 221 DDSMYIIFKNTIKISLIPKISSNPNYF 301
           D++ + I KN+ K S+ P   S P YF
Sbjct: 231 DNAKWQISKNSFKCSVYPSYLSGPTYF 257


>AL110487-12|CAB54430.2|  308|Caenorhabditis elegans Hypothetical
           protein Y39E4B.9 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 221 DDSMYIIFKNTIKISLIPKISSNPNYF 301
           D++ + I KN+ K S+ P   S P YF
Sbjct: 231 DNAKWQISKNSFKCSVYPSYLSGPTYF 257


>AC006730-2|AAK72091.1|  322|Caenorhabditis elegans Serpentine
           receptor, class i protein34 protein.
          Length = 322

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 411 GAIRI*YNILTVNAIIFQLFKIVNIIFLHLFF 316
           GA+    N+L +  IIF+ +KIV   ++ L F
Sbjct: 19  GAVSFVLNVLVILIIIFKSYKIVEFQYMLLAF 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,655,232
Number of Sequences: 27780
Number of extensions: 110201
Number of successful extensions: 209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)