Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0112
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   2.2  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   2.9  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   3.9  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    25   5.1  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    24   9.0  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    24   9.0  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 299 RKVAQYLGEVLEDQRDKLHENLMAN 373
           +KVAQ L E+L DQR  L  + +AN
Sbjct: 921 KKVAQRLTELLSDQRVHLPSSKIAN 945


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = -2

Query: 300 LVTPSTKVSSLPRSSDSPTN*SKVPTLRSGIGNL*LTLRLPDLVALFRVSQVC*QVLSPG 121
           L  PS  V SLPR+S+SP+     P  +       +   + D+ A F  SQ      +  
Sbjct: 734 LSAPSD-VGSLPRASNSPSRPVMHPNTQG------INTEIKDMAAQFPNSQTGGLTPNSW 786

Query: 120 ALITQYSVIFTTR 82
           ++ T  SV FTT+
Sbjct: 787 SMNTNVSVPFTTQ 799


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 266  PDHLTAPPTDPKFPP 222
            PDHL AP   P  PP
Sbjct: 1009 PDHLVAPRVKPLLPP 1023


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 151 PSLLTGLVARGTDHPVFS 98
           P + TGL   GTD+P+ S
Sbjct: 95  PEIRTGLTVGGTDYPISS 112


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 76  KINAVYNKLSETANNFGETTRPS 8
           ++N  Y  L+ T NN G T +PS
Sbjct: 331 QLNVTYAPLNITGNNSGVTYQPS 353


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 325 LSKVLGYLPGHTFDESVKLAQII*QPHQLIQSSHLKVRNR 206
           + +V    P  T  +++ +  I    HQ+   +H+KVRN+
Sbjct: 330 VGQVTSGCPSPTLGKNIAMGYISTGLHQVGTPAHIKVRNK 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,610,501
Number of Sequences: 5004
Number of extensions: 32134
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)