Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0112
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272... 65 2e-11
12_02_0417 - 18896949-18897269,18897340-18897424,18899561-188996... 30 0.68
10_02_0180 + 6292190-6292654,6293923-6294915 30 0.68
07_03_0482 + 18589573-18589728,18589889-18590065,18590518-185906... 28 2.1
11_04_0224 + 15059904-15059910,15059955-15060185,15060345-150604... 27 6.3
12_01_0615 + 5072267-5073253 26 8.4
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 26 8.4
11_06_0179 + 20952070-20955228 26 8.4
09_01_0130 + 1962865-1963032,1963201-1963301,1963613-1963709 26 8.4
02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236 26 8.4
>05_07_0331 -
29324967-29326256,29326919-29327020,29327226-29327278,
29327628-29327674,29327762-29327841,29327933-29328016,
29328383-29328433,29328925-29329050,29329231-29329347,
29329710-29329851,29329986-29330053,29330509-29330608,
29330713-29330840,29330929-29330997,29331083-29331205
Length = 859
Score = 64.9 bits (151), Expect = 2e-11
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Frame = +2
Query: 98 TEYWVISAPGD---KTCQQTWDTLNNATKSGNLSVN-YKFPIPDLKVGTLDQLVGLSDDL 265
T YW++S P T W L ++ + Y+F +PDL+VGTLD L+ LSDDL
Sbjct: 3 TRYWIVSLPVQTPGSTANSLWARLQDSISRHSFDTPLYRFNVPDLRVGTLDSLLALSDDL 62
Query: 266 GKLDTFVEGVTRKVAQYLGEV 328
K + F+EGV+ K+ + + E+
Sbjct: 63 VKSNVFIEGVSHKIRRQIEEL 83
>12_02_0417 -
18896949-18897269,18897340-18897424,18899561-18899656,
18900418-18900476,18901285-18901359
Length = 211
Score = 29.9 bits (64), Expect = 0.68
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 169 GIVQGIPSLLTGLVARGTDH 110
G+V GIP LL G + RG DH
Sbjct: 161 GVVNGIPQLLQGEMHRGADH 180
>10_02_0180 + 6292190-6292654,6293923-6294915
Length = 485
Score = 29.9 bits (64), Expect = 0.68
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +3
Query: 30 KLFAVSDNLL*TALIFKFLW*K*LNTG*SVPLATRPVSRLGIP*TMPPNQATSVSTINSL 209
+++ VSD T + KF W + G +PLA S+LG T N A VST+ S+
Sbjct: 396 RVYEVSDIKWTTVNLLKFGWAEFAGGG--IPLAGDLTSKLGSDHTRCKNSAGEVSTVVSM 453
Query: 210 FL 215
L
Sbjct: 454 LL 455
>07_03_0482 +
18589573-18589728,18589889-18590065,18590518-18590688,
18590913-18591029,18591614-18591742,18592210-18592311,
18592412-18592498,18592585-18592638,18594880-18595016,
18595181-18595235,18596133-18596188,18596275-18596334,
18596442-18596529,18596634-18597371,18597451-18597511,
18598301-18598403,18599180-18599311,18599393-18599477
Length = 835
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 177 QATSVSTINSLFLTLRWELWISWWGCQMIW 266
Q ++ ++ LFL ++ SWW C M W
Sbjct: 304 QEKALVSLAKLFLEFKYAPTPSWWDCTMYW 333
>11_04_0224 +
15059904-15059910,15059955-15060185,15060345-15060424,
15060497-15060547,15060548-15060670,15062151-15062184,
15062363-15062441,15062779-15062848,15075787-15075889,
15076247-15076284,15076449-15076550,15077027-15077107,
15077506-15077657,15077731-15077857,15078193-15078311,
15078636-15078749,15079001-15079214
Length = 574
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 116 SAPGDKTCQQTWDTLNNATKSGNL 187
SAPG+ C+Q+ + N TK N+
Sbjct: 317 SAPGNARCEQSIQAIRNCTKDINM 340
>12_01_0615 + 5072267-5073253
Length = 328
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Frame = -1
Query: 166 IVQGIPSLLTGL----VARGTDHPVFSHFHH 86
++ GIP+LLTGL ++ G DH + HH
Sbjct: 211 LLDGIPALLTGLPIPFLSAGADHIAATAGHH 241
>12_01_0038 -
312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 26.2 bits (55), Expect = 8.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3
Query: 185 GCLIWWHCSGYPKS 144
GC +WWHC K+
Sbjct: 399 GCNVWWHCQEVVKA 412
>11_06_0179 + 20952070-20955228
Length = 1052
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 109 PVFSHFHHK-NLKINAVYNKLSETANNFGETTRPSCP 2
PV + H + + N K AN FG ++ PSCP
Sbjct: 786 PVSTENHESLSYEKNTSLPKNGHDANGFGNSSEPSCP 822
>09_01_0130 + 1962865-1963032,1963201-1963301,1963613-1963709
Length = 121
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 136 GLVARGTDHPVFSHFHHKNLKIN 68
G A D + HFHH NL IN
Sbjct: 64 GRAAISIDRAIIFHFHHINLVIN 86
>02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236
Length = 1096
Score = 26.2 bits (55), Expect = 8.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 227 GTLDQLVGLSDDLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHEN 361
GT+D +G L KLD V +T + LG +L+ Q L N
Sbjct: 92 GTIDPSIGNLTYLRKLDLPVNHLTGTIPSELGRLLDLQHVNLSYN 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,663,245
Number of Sequences: 37544
Number of extensions: 216124
Number of successful extensions: 613
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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