Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0112
(376 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 2e-18
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 32 0.17
SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_49316| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_552| Best HMM Match : Laminin_EGF (HMM E-Value=1.3e-23) 28 2.8
SB_51803| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-30) 27 5.0
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_49317| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19) 27 5.0
SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09) 27 5.0
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 27 5.0
SB_14425| Best HMM Match : LRR_1 (HMM E-Value=3.3e-12) 27 6.5
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 27 6.5
SB_14462| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07) 26 8.7
SB_57080| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-43) 26 8.7
>SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 88.2 bits (209), Expect = 2e-18
Identities = 41/65 (63%), Positives = 52/65 (80%)
Frame = +2
Query: 95 MTEYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKL 274
M EYW++SAPG+KT QQT++ L + + +S YKFPIP+LKVGTLD LVGLSDDL K+
Sbjct: 1 MAEYWLVSAPGEKTQQQTYEALKS--RMVGMSPVYKFPIPELKVGTLDTLVGLSDDLNKV 58
Query: 275 DTFVE 289
D+FVE
Sbjct: 59 DSFVE 63
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 31.9 bits (69), Expect = 0.17
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +2
Query: 143 QTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDTFVEGVTRKVAQYLG 322
Q + NA K N +V + I DLK T+ QL D + LD V V K
Sbjct: 527 QLSEAQRNAEKFKNDNVRKQKTIDDLK-NTIAQL---EDKINALDNDVREVNTK-----N 577
Query: 323 EVLEDQRDKLHENLMANN 376
++LEDQ ++H++L+ N
Sbjct: 578 DILEDQAKEMHDDLLEAN 595
>SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/87 (20%), Positives = 47/87 (54%)
Frame = +2
Query: 113 ISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDTFVEG 292
++AP +K+C +D++ +A G ++ Y+ P+L++ +L + + L + +
Sbjct: 453 LAAPLEKSCTDLYDSIVSAALVGRVTTLYR-TRPELEIVSLFCSI-IDRCLATAEQVLAA 510
Query: 293 VTRKVAQYLGEVLEDQRDKLHENLMAN 373
V ++ AQ++ + L ++ ++ L A+
Sbjct: 511 VNQRHAQWINKELHSRQRANYKRLRAH 537
>SB_49316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 116 SAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVG 250
SA + +W T ++T S + SV + IP L QL+G
Sbjct: 219 SASASSSISSSWSTTQSSTFSASKSVKHVLTIPPRTTIILTQLIG 263
>SB_552| Best HMM Match : Laminin_EGF (HMM E-Value=1.3e-23)
Length = 198
Score = 27.9 bits (59), Expect = 2.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 302 SWSHLRRKCQACPDHLTAPPTDP 234
S SH R+C+ C D PTDP
Sbjct: 48 SESHAGRQCERCQDGYYGTPTDP 70
>SB_51803| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-30)
Length = 823
Score = 27.1 bits (57), Expect = 5.0
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -1
Query: 157 GIPSLLTGLVARGTDHPVFSHFHHKNLKINAVYNKLSETANNFGETTRPSC 5
G PS TG T+ V S + ++ + ++T NN E TRP C
Sbjct: 573 GFPS--TGRYRSATECSVLSADETSFKRYKSITDDFNDTTNNTQEETRPRC 621
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 206 PIPDLKVGTLDQLVGLSDDLGKLDTFVEGVTRKVAQYLGEVLEDQ 340
P+ V TL L+ D+ + FV GVT KVA L V+ D+
Sbjct: 1484 PVVTSTVNTLKSEKDLNTDMDRSQAFVMGVTDKVAS-LTTVVNDR 1527
>SB_49317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 116 SAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVG 250
SA + +W T ++T S + SV + IP L QL+G
Sbjct: 290 SASVSSSISSSWSTTQSSTFSASKSVKHVLTIPPRTTIILTQLIG 334
>SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19)
Length = 769
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 290 LRRKCQACPDHLTAPPTDPKFP 225
L R CQ C +H PP P P
Sbjct: 448 LSRACQTCTEHQNKPPKPPVDP 469
>SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)
Length = 1337
Score = 27.1 bits (57), Expect = 5.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 225 WELWISWWGCQMIW 266
WE WI W CQ+ W
Sbjct: 641 WEPWIEPWKCQLHW 654
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 266 GKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLM 367
GK D F E V + + E+LED++ LHE +
Sbjct: 886 GKFDPFYEEVNKLQTRI--EILEDEKQALHEEAL 917
>SB_14425| Best HMM Match : LRR_1 (HMM E-Value=3.3e-12)
Length = 1356
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 227 GTLDQLVGLSDDLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANN 376
G+ + + + L KLD + + A+Y+GE L + KL +M NN
Sbjct: 864 GSCNIVAEFGNKLTKLDLTFNSIGDEGAKYIGEALGHENCKLTMLVMYNN 913
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 26.6 bits (56), Expect = 6.5
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = -3
Query: 353 GAYRADLQVPLQGTGLPSWSHLRRKCQACPDHLTAPPTD--PKFPP*G 216
G Y VP +G G+P +H A P APP P PP G
Sbjct: 202 GGYAPPPYVPQEGGGIPPQNHPLTNYPAPPPQGYAPPPGGYPGAPPAG 249
>SB_14462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 116 SAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVG 250
SA T +W T ++ T S + +V + +P L QL+G
Sbjct: 245 SASASTTISNSWATTDSTTFSTSKTVQHSLTLPPRTTIILKQLIG 289
>SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)
Length = 651
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 233 LDQLVGLSDDLGKLDTFVEGVTRKVAQYLGEVLEDQRDKL-HENLMANN 376
L L S+ L KL + + A+Y+GE L + KL H N+ NN
Sbjct: 464 LKLLQNFSNKLTKLHLTFNSIGDEEAKYIGEALIHENCKLTHLNISHNN 512
>SB_57080| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-43)
Length = 360
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 89 VKMTEYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPD 217
V T+YW + G +++DT + + SGN NY +P+
Sbjct: 269 VTRTQYWALYPTGALHSSRSFDTYGH-SGSGNNMANYLNSLPN 310
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,055,692
Number of Sequences: 59808
Number of extensions: 241046
Number of successful extensions: 757
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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