Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0112
(376 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) ... 65 1e-11
At2g20470.1 68415.m02390 protein kinase, putative contains prote... 29 1.3
At3g59180.1 68416.m06598 hypothetical protein contains a novel d... 28 1.8
At1g09820.1 68414.m01104 pentatricopeptide (PPR) repeat-containi... 28 1.8
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha... 27 3.1
At1g60140.1 68414.m06775 glycosyl transferase family 20 protein ... 27 3.1
At1g48090.2 68414.m05363 C2 domain-containing protein contains P... 27 3.1
At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 27 3.1
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ... 27 5.4
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ... 27 5.4
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ... 27 5.4
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 26 7.1
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 26 7.1
At2g24710.1 68415.m02952 glutamate receptor family protein (GLR2... 26 7.1
At1g31130.1 68414.m03809 expressed protein 26 7.1
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 26 9.4
>At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) /
V-ATPase C subunit / vacuolar proton pump C subunit
(DET3) identical to vacuolar ATP synthase subunit C
SP:Q9SDS7 from [Arabidopsis thaliana]
Length = 375
Score = 65.3 bits (152), Expect = 1e-11
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +2
Query: 98 TEYWVISAPGDKTCQQTWDTLNNATKSGNLSVN-YKFPIPDLKVGTLDQLVGLSDDLGKL 274
+ YWV+S P + W+ L + Y+F IP+L+VGTLD L+ L DDL K
Sbjct: 3 SRYWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIPNLRVGTLDSLLALGDDLLKS 62
Query: 275 DTFVEGVTRKVAQYLGEV 328
++FVEGV++K+ + + E+
Sbjct: 63 NSFVEGVSQKIRRQIEEL 80
>At2g20470.1 68415.m02390 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 596
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 109 PVFSHFHHKNLKINAVYNKLSETANNFGETTRPSC 5
P F +FH +N YN SET+++ T+RP C
Sbjct: 533 PKFGYFH-----VNLEYNGSSETSDSSETTSRPPC 562
>At3g59180.1 68416.m06598 hypothetical protein contains a novel
domain with similarity to F-box domain;
Length = 475
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 210 FLTLRWELWISWWGCQMIWAS 272
FL + W LWI +W C+ I S
Sbjct: 7 FLQVLWILWIEYWHCKAILLS 27
>At1g09820.1 68414.m01104 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 606
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 154 IPSLLTGLVARGTDHPVFSHFHHKNLKINAVYNKL 50
I S L G V G+DH V S FH ++ N N +
Sbjct: 120 IRSFLDGFVRNGSDHQVHSIFHAISMCDNVCVNSI 154
>At2g17930.1 68415.m02076 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF02259 FAT domain, PF00454
Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
domain
Length = 3795
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 334 FKYLSKVLGYLPGHTFDESVKLAQII*QPHQLIQSS-HLKVRN 209
F YL K+L +P D S LAQ + +++++ HL +RN
Sbjct: 2063 FNYLEKLLSSMPPSQSDPSTALAQGLDVMNKVLEKQPHLFIRN 2105
>At1g60140.1 68414.m06775 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein contains Pfam
profile: PF02358 trehalose-phosphatase
Length = 861
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 164 NATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDTFV 286
NA + G V YK+ + ++++ +G+SDDL + T V
Sbjct: 437 NAVRDGMNLVPYKYTVCRQGTPSMNKSLGVSDDLPRTSTLV 477
>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 3427
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 352 ELIALIFKYLSKVLGYLPGHTFDESVKLAQI 260
E++A F Y + + PGH F + LA++
Sbjct: 202 EILASFFSYFNNICSSNPGHPFAAGITLAKL 232
>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 4144
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 352 ELIALIFKYLSKVLGYLPGHTFDESVKLAQI 260
E++A F Y + + PGH F + LA++
Sbjct: 202 EILASFFSYFNNICSSNPGHPFAAGITLAKL 232
>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 631
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 103 FSHFHHKNLKINAVYNK 53
FSH HH L+IN VY++
Sbjct: 341 FSHDHHLKLEINRVYDE 357
>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 656
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 103 FSHFHHKNLKINAVYNK 53
FSH HH LK + VYN+
Sbjct: 373 FSHGHHLKLKTSGVYNE 389
>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 517
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 103 FSHFHHKNLKINAVYNK 53
FSH HH L+IN VY++
Sbjct: 263 FSHDHHLKLEINRVYDE 279
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 103 FSHFHHKNLKINAVYNK 53
FSH HH LKI+ VY++
Sbjct: 202 FSHGHHLKLKISRVYDE 218
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 334 FKYLSKVLGYLPGHTFDESVKLAQII*QPHQLIQSS-HLKVRN 209
F YL K+L +P D S LAQ + +++++ HL ++N
Sbjct: 2144 FNYLEKLLSSMPPSQSDPSTALAQGLDVMNKVLEKQPHLFIKN 2186
>At2g24710.1 68415.m02952 glutamate receptor family protein (GLR2.3)
plant glutamate receptor family, PMID:11379626
Length = 895
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 287 RRKCQACPDHLTAPPTDPKF 228
++K Q+CPD +T P +P F
Sbjct: 802 KKKEQSCPDPITNPDPNPSF 821
>At1g31130.1 68414.m03809 expressed protein
Length = 321
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -1
Query: 172 GGIVQGIPSL--LTGLVARGTDHPVFSHFHHKNLKINAVYNKL 50
GG++ G+ + L GL+ + + V +HH+ + A+Y++L
Sbjct: 258 GGLLVGVLVMVNLVGLLVQSVFYYVCKSYHHQTIDKTALYDQL 300
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 25.8 bits (54), Expect = 9.4
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 247 HQLIQSSHLKVRNREFIVDTEVA*FGGIVQGIPSLLTGLVARGTDHPV 104
H + +SHLKV ++E IV G V G SL+ AR +P+
Sbjct: 90 HHNMLASHLKVNSKETIVGWYST--GAGVNGGSSLIHDFYAREVPNPI 135
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,544,886
Number of Sequences: 28952
Number of extensions: 171836
Number of successful extensions: 510
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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