Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0110
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    51   2e-07
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    47   3e-06
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   1.7  
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    27   2.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   6.9  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   9.1  

>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
 Frame = +2

Query: 80  ELP-ILNRDNIGVIVKLSPKELPGSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAY 256
           ELP  +N  NIG  V+L   + P   + +ATTHL ++P  +  RL Q  IL+ E+++ A 
Sbjct: 228 ELPGRMNTKNIGCCVRLERVDDPSRGLFLATTHLFWHPYGSYERLRQGAILVKEVNKMA- 286

Query: 257 FNNGRESGHFPVILTGDFNSTP 322
               +    +PV + GDFN+ P
Sbjct: 287 ----QSHPSWPVFIAGDFNTEP 304


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 17/108 (15%)
 Frame = +2

Query: 89  ILNRDNIGVIVKLSPKELPGSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAY-FNN 265
           ++ +DNI VI  L  KE  GS ++VA  H+ ++P+  DV++ Q+ +L+ EI + A  F N
Sbjct: 470 VMTKDNISVITLLENKE-NGSRLIVANCHIHWDPQFRDVKVIQVAMLMDEIAQVATKFRN 528

Query: 266 GR----------------ESGHFPVILTGDFNSTPESAVINLLDRGRV 361
                             E    P+++ GDFNS   S V + L  G +
Sbjct: 529 MPSKIPSDQLKDERPTYPEYLKIPILICGDFNSVQGSGVYDFLSSGSI 576


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 491 NSKYAFDSANADESDYWNDAHNRMFNS 571
           NS Y  DSA    S+Y   +HN MFNS
Sbjct: 600 NSSYLLDSA---ASNYSGTSHNEMFNS 623


>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = +2

Query: 185 NPKRTDVRLAQIKILLAEIDRFAYFNNG---RESGHFPVILTGDFNSTPESAVINLLDRG 355
           N  R   R+A  K     + ++A +++    ++  HFP   T D     E A INL +  
Sbjct: 2   NVTRLYFRVAGTKQFARYVHKYAAYSSTSFQKKKSHFPSPATLDHPDAGEDAFINLRNEN 61

Query: 356 RVRASSLRDNSDWKRIGV 409
            +  +       W  +G+
Sbjct: 62  YILNAVFDGVGGWANVGI 79


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 254 YFNNGRESGHFPVILTGDFNSTPESAVINLLD 349
           Y+N GR+    P  +T  FN T + +  +L D
Sbjct: 360 YYNRGRQPDQRPPNVTAAFNYTSDESQYSLRD 391


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -1

Query: 157 YGRPGQFLRRQFYN-HTDIITVE 92
           Y +PG+F  R FYN   D+  +E
Sbjct: 127 YAKPGEFSERAFYNGRADLTQLE 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,796
Number of Sequences: 5004
Number of extensions: 54059
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)