Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0110
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73875.1 68414.m08555 endonuclease/exonuclease/phosphatase fa... 56 2e-08
At1g31500.2 68414.m03858 endonuclease/exonuclease/phosphatase fa... 53 1e-07
At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase fa... 53 1e-07
At1g31500.3 68414.m03859 endonuclease/exonuclease/phosphatase fa... 50 1e-06
At5g11350.1 68418.m01325 endonuclease/exonuclease/phosphatase fa... 50 1e-06
At3g58560.1 68416.m06527 endonuclease/exonuclease/phosphatase fa... 44 8e-05
At3g58580.1 68416.m06529 endonuclease/exonuclease/phosphatase fa... 41 8e-04
At1g31530.1 68414.m03867 endonuclease/exonuclease/phosphatase fa... 39 0.002
At1g02270.1 68414.m00167 endonuclease/exonuclease/phosphatase fa... 34 0.091
At5g16390.2 68418.m01916 biotin carboxyl carrier protein 1 (BCCP... 28 4.5
At5g16390.1 68418.m01915 biotin carboxyl carrier protein 1 (BCCP... 28 4.5
At4g27110.1 68417.m03896 phytochelatin synthetase-related contai... 28 6.0
At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase fa... 28 6.0
>At1g73875.1 68414.m08555 endonuclease/exonuclease/phosphatase
family protein contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 454
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/75 (34%), Positives = 44/75 (58%)
Frame = +2
Query: 122 KLSPKELPGSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGRESGHFPVILT 301
KL + +VV H+L+NPKR D++L Q+++ L + + +E G+ PV +
Sbjct: 229 KLRVRSSDPRRLVVGNIHVLFNPKRGDIKLGQVRLFLEKA-----YKLSQEWGNIPVAIA 283
Query: 302 GDFNSTPESAVINLL 346
GD NSTP+SA+ + +
Sbjct: 284 GDLNSTPQSAIYDFI 298
>At1g31500.2 68414.m03858 endonuclease/exonuclease/phosphatase
family protein low similarity to SP|P31384
Glucose-repressible alcohol dehydrogenase
transcriptional effector (Carbon catabolite repressor
protein 4) {Saccharomyces cerevisiae}; contains Pfam
profile PF03372: Endonuclease/Exonuclease/phosphatase
family
Length = 383
Score = 53.2 bits (122), Expect = 1e-07
Identities = 29/91 (31%), Positives = 47/91 (51%)
Frame = +2
Query: 92 LNRDNIGVIVKLSPKELPGSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGR 271
L RD +G++ + ++VA THL ++P+ DV+LAQ K LL+ + +F +
Sbjct: 203 LKRDCVGIMAAFRINKPFQHIVIVANTHLYWDPELADVKLAQAKYLLSRLAQFKTLISDE 262
Query: 272 ESGHFPVILTGDFNSTPESAVINLLDRGRVR 364
++L GDFNS P V + L G +
Sbjct: 263 FECTPSLLLAGDFNSIPGDMVYSYLVSGNAK 293
>At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase
family protein low similarity to SP|P31384
Glucose-repressible alcohol dehydrogenase
transcriptional effector (Carbon catabolite repressor
protein 4) {Saccharomyces cerevisiae}; contains Pfam
profile PF03372: Endonuclease/Exonuclease/phosphatase
family
Length = 388
Score = 53.2 bits (122), Expect = 1e-07
Identities = 29/91 (31%), Positives = 47/91 (51%)
Frame = +2
Query: 92 LNRDNIGVIVKLSPKELPGSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGR 271
L RD +G++ + ++VA THL ++P+ DV+LAQ K LL+ + +F +
Sbjct: 208 LKRDCVGIMAAFRINKPFQHIVIVANTHLYWDPELADVKLAQAKYLLSRLAQFKTLISDE 267
Query: 272 ESGHFPVILTGDFNSTPESAVINLLDRGRVR 364
++L GDFNS P V + L G +
Sbjct: 268 FECTPSLLLAGDFNSIPGDMVYSYLVSGNAK 298
>At1g31500.3 68414.m03859 endonuclease/exonuclease/phosphatase
family protein low similarity to SP|P31384
Glucose-repressible alcohol dehydrogenase
transcriptional effector (Carbon catabolite repressor
protein 4) {Saccharomyces cerevisiae}; contains Pfam
profile PF03372: Endonuclease/Exonuclease/phosphatase
family
Length = 283
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/81 (33%), Positives = 43/81 (53%)
Frame = +2
Query: 92 LNRDNIGVIVKLSPKELPGSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGR 271
L RD +G++ + ++VA THL ++P+ DV+LAQ K LL+ + +F +
Sbjct: 203 LKRDCVGIMAAFRINKPFQHIVIVANTHLYWDPELADVKLAQAKYLLSRLAQFKTLISDE 262
Query: 272 ESGHFPVILTGDFNSTPESAV 334
++L GDFNS P V
Sbjct: 263 FECTPSLLLAGDFNSIPGDMV 283
>At5g11350.1 68418.m01325 endonuclease/exonuclease/phosphatase
family protein contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 754
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +2
Query: 131 PKELPGSS-IVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGRESGHFPVILTGD 307
P+ GS +V+ H+L+NPKR D +L Q++ LL + + + P++L GD
Sbjct: 318 PESSAGSHRVVICNIHVLFNPKRGDFKLGQVRTLLDKAHAVSKLWDDA-----PIVLCGD 372
Query: 308 FNSTPESAVINLLDRGRVRASSL 376
FN TP+S + N + ++ S L
Sbjct: 373 FNCTPKSPLYNFISDRKLDLSGL 395
>At3g58560.1 68416.m06527 endonuclease/exonuclease/phosphatase
family protein similar to SP|P31384 Glucose-repressible
alcohol dehydrogenase transcriptional effector (Carbon
catabolite repressor protein 4) {Saccharomyces
cerevisiae}; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 602
Score = 44.0 bits (99), Expect = 8e-05
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Frame = +2
Query: 59 PVEFFQPELPILNRDNIGVIVKLSPK------ELPGSS--IVVATTHLLYNPKRTDVRLA 214
PV + L L +DN+ +IV L K + PG + VA TH+ + DV+L
Sbjct: 372 PVSQKKNALNRLVKDNVALIVVLEAKFGSQAADNPGKRQLLCVANTHVNVPHELKDVKLW 431
Query: 215 QIKILLAEIDRFAYFNNGRESGHFPVILTGDFNSTPESAVINLLDRGRV 361
Q+ LL +++ A S P+++ GDFN+ P SA LL G+V
Sbjct: 432 QVHTLLKGLEKIA------ASADIPMLVCGDFNTVPASAPHTLLAVGKV 474
>At3g58580.1 68416.m06529 endonuclease/exonuclease/phosphatase
family protein similar to SP|P31384 Glucose-repressible
alcohol dehydrogenase transcriptional effector (Carbon
catabolite repressor protein 4) {Saccharomyces
cerevisiae}; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 605
Score = 40.7 bits (91), Expect = 8e-04
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Frame = +2
Query: 92 LNRDNIGVIVKLS------PKELPGSS----IVVATTHLLYNPKRTDVRLAQIKILLAEI 241
L +DNI +IV L P + G +V+A TH+ DV+L Q+ LL +
Sbjct: 386 LVKDNIALIVVLEAKFGNQPTDPSGKRQLICVVLANTHVNVQQDLKDVKLWQVHTLLKGL 445
Query: 242 DRFAYFNNGRESGHFPVILTGDFNSTPESAVINLLDRGRV 361
++ A S P+++ GDFN+ P SA LL G+V
Sbjct: 446 EKIA------ASADIPMLVCGDFNTLPGSAPHTLLVMGKV 479
>At1g31530.1 68414.m03867 endonuclease/exonuclease/phosphatase
family protein contains similarity to nocturnin [Homo
sapiens] GI:9885288; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 283
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +2
Query: 89 ILNRDNIGVIVKLSPKELPGSSIVV-ATTHLLYN-PKR-TDVRLAQIKILLAEIDRFAYF 259
++N + + V++ P + +V+ A++HL P R D++LAQ+K L+ E+ F
Sbjct: 114 VVNAEELSVVMVAFKILKPFNHVVIIASSHLKSGKPDRWDDLKLAQVKTLMTELASFKEI 173
Query: 260 NNGRESGHFPVILTGDFNSTP 322
+ + VIL GDFNS P
Sbjct: 174 ISALTNCSPSVILAGDFNSKP 194
>At1g02270.1 68414.m00167 endonuclease/exonuclease/phosphatase
family protein / calcium-binding EF hand family protein
contains Pfam profiles: PF03372
endonuclease/exonuclease/phosphatase family, PF00036 EF
hand
Length = 484
Score = 33.9 bits (74), Expect = 0.091
Identities = 16/74 (21%), Positives = 35/74 (47%)
Frame = +2
Query: 125 LSPKELPGSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGRESGHFPVILTG 304
L+ K+ +++ THLL+ P + + + ++ + ++ + + H P+IL G
Sbjct: 201 LNGKQDVQQEVIIVNTHLLF-PHDSSLSIVRLHQVYKILEYLEAYQKENKLNHMPIILCG 259
Query: 305 DFNSTPESAVINLL 346
D+N + V L
Sbjct: 260 DWNGSKRGHVYKFL 273
>At5g16390.2 68418.m01916 biotin carboxyl carrier protein 1 (BCCP1)
identical to biotin carboxyl carrier protein of
acetyl-CoA carboxylase precursor [Arabidopsis thaliana]
gi|9759121|dbj|BAB09606
Length = 254
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -2
Query: 423 WQLSVTP-IRFQSELSRSELALTRPLSNKFITALS--GVELKSPVSITGKWPDSL 268
++LS P +RF S+ SRS + + SNK T S ++ P S GK +SL
Sbjct: 38 FRLSAKPKLRFLSKPSRSSYPVVKAQSNKVSTGASSNAAKVDGPSSAEGKEKNSL 92
>At5g16390.1 68418.m01915 biotin carboxyl carrier protein 1 (BCCP1)
identical to biotin carboxyl carrier protein of
acetyl-CoA carboxylase precursor [Arabidopsis thaliana]
gi|9759121|dbj|BAB09606
Length = 280
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -2
Query: 423 WQLSVTP-IRFQSELSRSELALTRPLSNKFITALS--GVELKSPVSITGKWPDSL 268
++LS P +RF S+ SRS + + SNK T S ++ P S GK +SL
Sbjct: 38 FRLSAKPKLRFLSKPSRSSYPVVKAQSNKVSTGASSNAAKVDGPSSAEGKEKNSL 92
>At4g27110.1 68417.m03896 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region
Length = 668
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 168 VATTMEDPGNSFGDNFTITPILSRLRIGSSGWK 70
++T +E G FG T TP+ +++ + GW+
Sbjct: 150 ISTNIEITGTVFGGKGTATPMPKSIKLTNDGWQ 182
>At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase
family protein contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 441
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 80 ELPILNRDNIGVIVKLSPK 136
ELP+L D+ G++V LSPK
Sbjct: 423 ELPVLPSDHFGLLVTLSPK 441
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,807,042
Number of Sequences: 28952
Number of extensions: 282597
Number of successful extensions: 871
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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