Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0109
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 33 0.029
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 32 0.067
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.20
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 30 0.36
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 29 0.62
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 29 0.62
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 28 1.1
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 28 1.1
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 27 1.9
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 1.9
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 1.9
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc... 27 2.5
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 27 2.5
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 27 3.3
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 3.3
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 26 4.4
SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr 1|||... 26 5.8
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 26 5.8
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 26 5.8
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 26 5.8
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 26 5.8
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 7.7
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 7.7
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 25 7.7
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 7.7
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 25 7.7
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 7.7
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 33.5 bits (73), Expect = 0.029
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 158 TQPNLTKLETTPTKYDEKITMNYDTNIPDDLKVSRSSYANSLERPKSEMMKKLLAKNPIL 337
T+P+ K++ T TK+ +K D N P+ V SSY S P + + + + +
Sbjct: 255 TEPSSEKVDNTETKFSKKTKNINDENFPNPFNVI-SSYETSAS-PSTVIDQSSQVSSIFV 312
Query: 338 NVHIDQSTQREA---STSAEVQTPMTDA 412
N + +S +A S S + TP D+
Sbjct: 313 NKRLRKSVNNQAISRSDSLSLDTPKIDS 340
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 32.3 bits (70), Expect = 0.067
Identities = 52/197 (26%), Positives = 76/197 (38%), Gaps = 7/197 (3%)
Frame = +2
Query: 74 KVHLKLVSEFAKTTSDGSTLAPPDNDPPTQPNLTK---LETTPTKYDEKITMNYDTNIPD 244
KVHL S F +D L P + PP K LE D IT + ++
Sbjct: 21 KVHL---SNFLPIINDLQLLHPA-SAPPLLSEFQKQCTLEFVRQNADLSITKDNFRDVYK 76
Query: 245 DLKVSRS-SYANSLERPKSEMMKKLLAKNPILNVHIDQSTQREASTSA--EVQTPMTDAS 415
L + S+AN E+P E + N H S ++S++A E P S
Sbjct: 77 KLTENEDDSFANQAEKPSMEQQNSKNSIKEDANEHSVNSAHSKSSSNASPESLNPSQMMS 136
Query: 416 KSAMHQPDIVNFDLKPSEMKTKDYEDFVSNIRVGSNNSSLNKKMESFSTDWRDSKEG-SD 592
K + P + F S+ F + + N SS N +M D D G D
Sbjct: 137 K-RLSLPPMSQF--TDSDFVNILRTPFAQSTPLNRNTSSRNTEMPLVRKDKPDFSNGHHD 193
Query: 593 LVTFTTDRTQNLEDKSR 643
L+ T+ Q++ DK+R
Sbjct: 194 LIKQITE-LQDMLDKAR 209
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.7 bits (66), Expect = 0.20
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Frame = +2
Query: 23 EHETSDHLAKRIMDENMKVHLKLVSEFAKTTSDGSTLAPPDNDPPTQP-NLTKLETTPTK 199
+HE S KR M+ H L + +S+GST + P P N + L
Sbjct: 59 QHEDSSEELKRQEVRGMRRHSDLSIDAKLGSSEGSTASSALPLTPRSPSNASWLLVRGGL 118
Query: 200 YDEKITMNYDTNIPDDLKVSRSSYANSLERPKSEMMKKLLAKNPILNVHIDQSTQREAST 379
D I D N +S+ N L++ +S+ + L +N IL++ + S +++ +T
Sbjct: 119 LDSPI---LDIN----SVTQKSNLLNELKQVRSK-LAALEHENGILSLQLSSSNKKDKNT 170
Query: 380 SAEVQTPMTDASKSAMHQPDIVNFDLKPSEMKTKDYE 490
S+ T +T + Q + N + S +++ Y+
Sbjct: 171 SS--VTTLTSEEDVSYFQKKLTNMESNFSAKQSEAYD 205
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 29.9 bits (64), Expect = 0.36
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 173 TKLETTPTKYDEKITMNYDTNIPDDLKVSRSSYANSLERPKSEMMK 310
TK+ TT K + ++N N P K SR+ LER K+EM K
Sbjct: 109 TKI-TTAEKSSVQSSLNTKENTPQQPKKSRNRQKERLERRKAEMKK 153
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 29.1 bits (62), Expect = 0.62
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 548 ESFSTDWRDSKEGSDLVTFTTDRTQNLEDKSRKTYTKSIEIGE 676
E F D K+ + LVT TT R NL + +K+Y S+ I +
Sbjct: 279 EWFCDDCIRRKKQAPLVTGTTARELNLSSEEKKSYLLSLPISQ 321
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 29.1 bits (62), Expect = 0.62
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Frame = +2
Query: 140 PDNDPPTQPNLTKLETTPTKYDEKITMNYDTNIPDDLKVSRSSYANSLER--PKSEMMKK 313
PDN T+P+ ++ +P + + + P K +R +++ + R K+ M +
Sbjct: 320 PDNVDSTEPSTPNVQKSPNRLPPVGNFSLPPSAPVREKRNRPAHSAQISRSISKTSRMYR 379
Query: 314 LLAKNPI--LNVHI-DQSTQREASTSAEVQTPMTDASKSAMHQPDIVNF 451
A+ P+ ++H+ Q S A Q + + H PD + F
Sbjct: 380 QTAEEPLNSYSLHVYPQKITAPTSPYAATQEELLAFTTIRQHLPDTLAF 428
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 28.3 bits (60), Expect = 1.1
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Frame = +2
Query: 197 KYDEKIT-MNYDTNIPDDLKVSRSSYANSLERPKSEMMKKLLAKNPILNVHIDQSTQREA 373
+YD ++T D PD + + SYA E+M+++ + VH++ + +R
Sbjct: 133 RYDRQLTPTRVDAFQPDGTQSNGRSYA--------EVMRQVELEKEERRVHMELNQRRRE 184
Query: 374 STSAEVQTPMTDASKSAMHQPDIVNFDLKPSEMKTKDYEDFVSNIRVGSNNSSLNKKMES 553
T EV+ + + K + + KP + V+ + S +K E+
Sbjct: 185 GTLKEVEEEESISDKKRELELNNTEISQKPKRSRWDQAPPSVTQVSTTKRRSRWDKAPEN 244
Query: 554 FS 559
F+
Sbjct: 245 FT 246
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 107 KTTSDGSTLAPPDNDPPTQPNLTKLETTPTKYDEKITMNYDTNIPDDL 250
+T+S ST P +ND N T E++ T + N DT+ DDL
Sbjct: 341 ETSSHPSTAVPSENDTTESENDTLSESSTTSISSSPSENSDTS--DDL 386
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 53 RIMDENMKVHLKLVSEFAKTTSDGSTLAPPDNDPPTQPNLTKLETTPTKYDEKIT 217
RI+ + LKLV F D + A PD+ P +P +++ TP + D + T
Sbjct: 589 RILGKVTYKFLKLVQYFIINIFDILSPAGPDSQLPPEPPTLQVDRTPQQPDPQET 643
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -3
Query: 499 DEVLVIFSFHFGGFQIEVDYV--GLVHGGFRSVSHRRLDF 386
D ++++F+FH+ FQ+ + LVH F+S + + L F
Sbjct: 599 DYLVMLFAFHYSMFQVMTKLIADNLVHFSFQSCACQTLFF 638
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +2
Query: 137 PPDNDPPTQPNLTKLETTPTKYDEK---ITMNYDTNIP 241
PP P + PN+T + +P + E+ I + D+NIP
Sbjct: 112 PPPPQPQSHPNVTVISASPARAIEQQPTILSSTDSNIP 149
>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 206 EKI-TMNYDTNIPDDLKVSRSSYANSLERPKSEMMKKLLAKNPILNVHIDQSTQREAST 379
EKI T NY + P D K SR S SL+ ++ +K +K N+ ++S + T
Sbjct: 61 EKIGTSNYYWSFPSDAKRSRESVLGSLQAQLDDLKQK--SKTLDENISFEKSKRDNEGT 117
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 27.1 bits (57), Expect = 2.5
Identities = 23/103 (22%), Positives = 43/103 (41%)
Frame = +2
Query: 98 EFAKTTSDGSTLAPPDNDPPTQPNLTKLETTPTKYDEKITMNYDTNIPDDLKVSRSSYAN 277
E A + D + L P D P +T +T+P + E ++ N +T +R+S
Sbjct: 1048 ESASSGGDKTQLNGPGADQPVTATITFDKTSPWRNRENLSHNNNT--------TRASLRE 1099
Query: 278 SLERPKSEMMKKLLAKNPILNVHIDQSTQREASTSAEVQTPMT 406
LE+ K++ + + + +QRE Q P++
Sbjct: 1100 LLEQEKADASTTTVLSDSRFMKAPTKKSQREKKKELSKQVPIS 1142
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.6 bits (56), Expect = 3.3
Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 3/169 (1%)
Frame = +2
Query: 170 LTKLETTPTKYDEKITMNYDTNIPDDLKVSRSSYANSLERPKSEMMKKLLAKNPILNVHI 349
L+K+E KY K+ + D + SSY++ L + E K NP +V
Sbjct: 210 LSKIEEQNLKYTSKLASVEKLMLDSDAQDLYSSYSHDLIPSQIEAGKN--GANP--DVFD 265
Query: 350 DQSTQREASTSAEVQTPMTDASKSAMHQPDIVNFDLKPSEMKTKDYEDFVSNIRVGSNNS 529
D + + SA +P +A ++V+ + + +K E+ S++
Sbjct: 266 DTHDKYTDNLSARAISPRAPRPSTA---SEVVSDYFEQNSAFSKAPENTESSVNQNYIVG 322
Query: 530 SLNKKMESFS---TDWRDSKEGSDLVTFTTDRTQNLEDKSRKTYTKSIE 667
+L K+ ++ S T S L T +TD+T + D + Y S++
Sbjct: 323 NLVKQFQAHSEYITSLDFSHPFGTLATASTDKTVKVWDMAGVVYLGSLK 371
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +2
Query: 185 TTPTKYDEKITMNYDTNIPDDLKVSRSSYANSLER 289
TTP+ Y ++++ NYD+ P + S +++ + + +
Sbjct: 308 TTPSLYSQRLSNNYDSTTPGFPRFSPANFDSVINK 342
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 452 DLKPSEMKTKDYEDFVSNIRVGSNNSSLNKK 544
DL+PS M ++ Y FVS GS+NS+ +K
Sbjct: 44 DLEPSSMLSEGYYGFVSQ-PSGSSNSNKQEK 73
>SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 133 GTTRQRSADTT*PYETRNDTDQIR*EN-NDELRHKYTGRLKSIAQ 264
G ++R+ D YE+++ EN NDE K TG++KS+ +
Sbjct: 6 GRRKERNGDMLPLYESQSPQHLDSLENENDERISKLTGKVKSLKE 50
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 506 IRVGSNNSSLNKKMESFSTDWRDSKEGSDLVTFTTDRTQNLEDKSRKTYTKSI 664
+R ++SSL+K E + D + G + T +R L KSR Y KS+
Sbjct: 326 VRSSLSSSSLSKDTEPSTVDMHIAFTGLNKPTIERERNLKLRKKSR-FYKKSL 377
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 191 PTKYDEKITMNYDTNIPDDLKVSRSSYANSLERP 292
P + +M YDTN+P D + Y N + P
Sbjct: 526 PATMNYSNSMGYDTNVPADNGYYQQGYGNVMMPP 559
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 324 KILYSTYTSTRARKERLLPVPKSKRR*LTLRNP 422
+IL+ T ARK R+ VPK+ R L LR P
Sbjct: 248 RILFLLMNMTLARK-RIFLVPKASMRPLKLREP 279
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 320 AKNPILNVHIDQSTQREAST--SAEVQTPMTDASKSAMHQP 436
A P+L + +T E T + EVQTP+ D S H P
Sbjct: 470 ANVPLLGLSNKATTASETGTVNAEEVQTPVADVIGSLNHPP 510
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +2
Query: 155 PTQPNLTKLETTPTKYDEKITMNYDTNIPDDLKVSRSSYANSLERP 292
PT+PN +K TTP+ ++ ++++N+ K+S S+ ++P
Sbjct: 15 PTKPNFSKTSTTPS--TSQLKHSHESNV----KMSTSTVTEHRKKP 54
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 149 DPPTQPNLTKLETTPTKYDEKITMNYDT-NIPDDLKVSRSSYANSLERPKSEMMKKLLAK 325
+PP +P T+ T+P K + DT + D +S SS + + S L+
Sbjct: 209 EPPKRPAFTRSATSPDKILPTRIKSKDTVSSGDSTPLSGSSSSKGMLMSMSTSENHSLSS 268
Query: 326 NPILN 340
NP L+
Sbjct: 269 NPELS 273
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 25.4 bits (53), Expect = 7.7
Identities = 26/111 (23%), Positives = 46/111 (41%)
Frame = +2
Query: 302 MMKKLLAKNPILNVHIDQSTQREASTSAEVQTPMTDASKSAMHQPDIVNFDLKPSEMKTK 481
M+ + LAKNP+ + E+ +S TP T++ KS P + + + + K
Sbjct: 77 MLSRALAKNPV-------PSPAESESSERRHTPQTNSQKS-QKTPRLSSNKRRTLKNDAK 128
Query: 482 DYEDFVSNIRVGSNNSSLNKKMESFSTDWRDSKEGSDLVTFTTDRTQNLED 634
++ G++ S N ++S R + SD T R N+ D
Sbjct: 129 QR----NSQSPGTDTSDANLTIQSIEAPRRAPQRLSDFFTPDGRRVSNIRD 175
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 170 LTKLETTPTKYDEKITMNYDTNIPDDLKVSRSSYANSLERPKSEMM 307
+ K+E+T T K NY+T I D ++ +S+ + KS ++
Sbjct: 270 ILKIESTSTTSQIKPKCNYETEITDCMEKLQSNLSELKSSRKSSLI 315
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 83 LKLVSEFAKTTSDGSTLAPPD 145
+K VSEFAK T D S+L+ D
Sbjct: 65 IKKVSEFAKQTGDYSSLSVTD 85
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.7
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Frame = +2
Query: 272 ANSLERPKSEMMKKLLA-KNPILNVHIDQST------QREASTSAEVQTPMTDASKSAMH 430
ANSL P S +K + + NP ++ S+ + TS T + S S
Sbjct: 179 ANSLSPPSSRALKPIHSLSNPSTASSLEPSSPLGSEDECHPPTSDMQPTHELNESPSTPT 238
Query: 431 QPDIVNFDLKPSEMKTKDYEDFVSN 505
PD +++ PSE+ +SN
Sbjct: 239 APDFPHYNSSPSELSPTQRRSSISN 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,270
Number of Sequences: 5004
Number of extensions: 56268
Number of successful extensions: 271
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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