Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0108
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 64 2e-11
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 57 3e-09
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 55 1e-08
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 54 2e-08
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 51 1e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 50 5e-07
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 49 8e-07
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 48 1e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 48 1e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 4e-06
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 46 7e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 44 3e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 44 3e-05
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 44 3e-05
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 42 9e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 42 1e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 41 2e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 41 2e-04
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 40 3e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 39 6e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 39 8e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 38 0.001
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.002
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 38 0.002
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 38 0.002
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 37 0.003
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 37 0.003
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 37 0.003
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.006
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 35 0.010
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.014
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 34 0.024
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.024
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 33 0.032
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.22
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 30 0.30
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 29 0.68
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 2.8
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 27 3.6
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 3.6
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.6
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 26 6.4
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 6.4
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
P + + + LS T E I F++YGP+++++VV + TG+S G+ FV FE D K+A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 628 KNECTGMEIDGRRIRVD 678
G+ ++GRRI VD
Sbjct: 158 YKASAGLMLNGRRIVVD 174
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 56.8 bits (131), Expect = 3e-09
Identities = 31/85 (36%), Positives = 47/85 (55%)
Frame = +1
Query: 424 VRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 603
+R L+ S C+ V LS YTTE+QI +FSK G + ++ + +D T GFCFV +
Sbjct: 22 LRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYF 81
Query: 604 DMEDAKIAKNECTGMEIDGRRIRVD 678
+ +DA + + +D R IR D
Sbjct: 82 ENQDALDSLKYISRTSLDERIIRAD 106
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 54.8 bits (126), Expect = 1e-08
Identities = 24/65 (36%), Positives = 40/65 (61%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 669
+EQQ+ IF++ GPV ++V+D +TG +G+ F F D E +A + E+ R+I
Sbjct: 19 SEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKI 78
Query: 670 RVDYP 684
RV++P
Sbjct: 79 RVEFP 83
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/74 (35%), Positives = 42/74 (56%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V L+ T + + + FS GP+ VV + +TG +RG+ FV F +EDA+ A E
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 640 TGMEIDGRRIRVDY 681
++ GR +R+D+
Sbjct: 67 KNKKLHGRILRLDF 80
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/62 (40%), Positives = 36/62 (58%)
Frame = +1
Query: 496 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 675
Q + FSK+G V ++++ GR GF FV+ +D + A+ A N G EIDGR I V
Sbjct: 122 QHLEPHFSKFGKVREIKIPTKGG-GRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
Query: 676 DY 681
D+
Sbjct: 181 DW 182
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 621
TEQ++ + F ++GP+ ++V D T RS G F+ F +D +
Sbjct: 289 TEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQ 332
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 51.2 bits (117), Expect = 1e-07
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
PS + V + E+Q+ IF + GPV Q+VID ++G+ +G+ F + D A A
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
Query: 628 KNECTGMEIDGRRIRVDYP 684
+ RR+RVD+P
Sbjct: 63 VRNLNNYDAGTRRLRVDFP 81
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 49.6 bits (113), Expect = 5e-07
Identities = 25/68 (36%), Positives = 39/68 (57%)
Frame = +1
Query: 475 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 654
LS +Q + F +YG + +V++D ++GRS+G+ +V FE E AK A EI
Sbjct: 270 LSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEI 329
Query: 655 DGRRIRVD 678
DGR + +D
Sbjct: 330 DGRMVNLD 337
Score = 46.4 bits (105), Expect = 4e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
PS + V LS TE ++ F G + +++ D ++GR +GF +V F D++ AK
Sbjct: 364 PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKC 423
Query: 628 KNECTGMEIDGRRIRVDY 681
E G I GR R+D+
Sbjct: 424 V-EMNGHFIAGRPCRLDF 440
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 48.8 bits (111), Expect = 8e-07
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +1
Query: 493 EQQINHIFSKYG-PVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 669
E I +FS++G PVD + +V D +TG+S+GF F+ +ED +A + T +++ R +
Sbjct: 44 EDDILCVFSEFGEPVD-INLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLV 102
Query: 670 RVDY 681
RVD+
Sbjct: 103 RVDH 106
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 48.0 bits (109), Expect = 1e-06
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
P L V L+ T ++ + IFS++G + QV+ D +TG S + F+ F++ E + A
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
Query: 628 KNECTGMEIDGRRIRVDY 681
+ + ID RI VD+
Sbjct: 302 YFKMQNVLIDDSRIHVDF 319
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 48.0 bits (109), Expect = 1e-06
Identities = 30/78 (38%), Positives = 41/78 (52%)
Frame = +1
Query: 442 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 621
PT S L V L TE + +F+ GPV ++V DA T RS G+ +V F +MED +
Sbjct: 77 PT-SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGE 135
Query: 622 IAKNECTGMEIDGRRIRV 675
A +E I GR R+
Sbjct: 136 KALDELNYTLIKGRPCRI 153
Score = 31.9 bits (69), Expect = 0.097
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +1
Query: 493 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 672
++++ FS +G + +++ D + G+S+GF FV + E+A A E + G+ +
Sbjct: 377 DERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLY 435
Query: 673 V 675
V
Sbjct: 436 V 436
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 46.4 bits (105), Expect = 4e-06
Identities = 25/72 (34%), Positives = 39/72 (54%)
Frame = +1
Query: 460 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 639
L V G++ E ++ IFSK+G V V+++ + T SRGF F+ F +E+A A +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 640 TGMEIDGRRIRV 675
E GR + V
Sbjct: 163 NSQEFYGRVLNV 174
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 693 RAHTPTPGIYMG 728
R H+PTPG YMG
Sbjct: 181 RPHSPTPGKYMG 192
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 45.6 bits (103), Expect = 7e-06
Identities = 23/77 (29%), Positives = 43/77 (55%)
Frame = +1
Query: 451 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 630
S L V LS T E+++ +F ++G + +V + D +TGR++GF FV + D + A A+
Sbjct: 201 SATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKAR 260
Query: 631 NECTGMEIDGRRIRVDY 681
+ G + +R ++
Sbjct: 261 DRLDGYGWNNLILRCEF 277
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/86 (30%), Positives = 44/86 (51%)
Frame = +1
Query: 451 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 630
S C+ V L T+++ + +F+ G V + ++ + TGRS+GF V FE+ DA +
Sbjct: 279 SDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSI 337
Query: 631 NECTGMEIDGRRIRVDYP*HSELTLP 708
+ G GR +++ Y H LP
Sbjct: 338 EKLNGYRYGGRPLQLSYA-HYATPLP 362
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/88 (25%), Positives = 44/88 (50%)
Frame = +1
Query: 412 LGDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 591
+ ++ R ++ + ++ L + L+ E + +F +G +++V + ID KT +GF +
Sbjct: 309 VSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAY 368
Query: 592 VYFEDMEDAKIAKNECTGMEIDGRRIRV 675
+ F D +DA A E GR + V
Sbjct: 369 IDFHDADDAVRAYLELDAKPFQGRLLHV 396
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 574 SRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 675
S GF FV F+D A A + G +DG ++ +
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEI 697
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +1
Query: 475 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRS-RGFCFVYFEDMEDAKIAKNECTGME 651
L T++ + + YG + V+V K RS RGF F F +A A
Sbjct: 728 LPFEATKKDVQSLLGAYGQLRSVRV--PKKFDRSARGFAFAEFVTAREAANAMRALKNTH 785
Query: 652 IDGRRIRVDY 681
+ GR + + Y
Sbjct: 786 LLGRHLVLQY 795
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 550 VIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 675
V K G SR F F+ F++ EDA A ++ RI V
Sbjct: 37 VAKTKEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEV 78
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/72 (26%), Positives = 41/72 (56%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V G+ TE+Q+ +F+ +GPV + + +D +TG +G+ + + +E A+ A +E
Sbjct: 14 VTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDE-KN 72
Query: 646 MEIDGRRIRVDY 681
+ + ++ VD+
Sbjct: 73 LSLLDEKLEVDF 84
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 41.9 bits (94), Expect = 9e-05
Identities = 23/81 (28%), Positives = 44/81 (54%)
Frame = +1
Query: 439 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 618
N + L + LS T +++ +F +YGPV ++++ T ++RG FV +E+++DA
Sbjct: 7 NQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYENVQDA 63
Query: 619 KIAKNECTGMEIDGRRIRVDY 681
+ A + +G R + V Y
Sbjct: 64 RRACEKLSGYNFMDRYLVVHY 84
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 41.5 bits (93), Expect = 1e-04
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +1
Query: 421 RVRLLENPTPS---RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 591
RV + +P P RC+ V L+ E+ + F G +D V++V D KT +GF +
Sbjct: 256 RVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAY 315
Query: 592 VYFEDM--EDAKIAKNECTGMEIDGRRIRV 675
+ F+D D + NE E GR +R+
Sbjct: 316 IQFKDTMGVDKALLLNEKKMPE--GRTLRI 343
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
P R + V L+ T++ I IF YG +D + + I K+ ++G+C++ + + A A
Sbjct: 97 PLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANA 156
Query: 628 KNECTGMEIDGRRIRV 675
++ E+DG + V
Sbjct: 157 VDKMNNAELDGEELFV 172
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
+ L L E Q+ + +G + Q++ + G S+GFCF F++ DA++A + G
Sbjct: 314 ISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDG 373
Query: 646 MEIDGRRIRVDY 681
+ G ++ +
Sbjct: 374 KDTYGNKLHAQF 385
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQ----INHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMED 615
P CL V L+ +E++ + F ++GP+ V+V+ K R + FV F++ +D
Sbjct: 77 PVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVL---KDWLQRPYSFVQFQNTDD 133
Query: 616 AKIAKNECTGMEIDGRRIRVD 678
A A +E +DGR IR++
Sbjct: 134 ASKALSEAQNTILDGRHIRIE 154
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 39.1 bits (87), Expect = 6e-04
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +1
Query: 472 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED---MEDAKIAKNECT 642
GL+ TT+ + F ++G V V+ D+ TGRSRGF F+ F++ + + ++
Sbjct: 169 GLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLD 228
Query: 643 GMEIDGRR 666
G ID +R
Sbjct: 229 GKIIDPKR 236
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +1
Query: 490 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 669
TE++ + F+++G V +++D TGR RGF FV +E+ E A A + I G+ +
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPV 317
Query: 670 RV 675
V
Sbjct: 318 EV 319
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +1
Query: 478 SLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEID 657
++ T + Q+ +FS +G + + +G S+G+ FV F +E A AK+ GM +
Sbjct: 392 TVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVG 451
Query: 658 GRRIRV 675
+RI V
Sbjct: 452 KKRIFV 457
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = +1
Query: 493 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKI 624
E+Q+ FS++GPV ++++ + KTG S+ + F+ FE ++ A +
Sbjct: 118 EKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANV 161
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 427 RLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF-- 600
+L E R + V L+ T +++ F + GPV Q+V D +GRS+G +V F
Sbjct: 231 KLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCH 290
Query: 601 EDMEDAKIA 627
ED A IA
Sbjct: 291 EDSVQAAIA 299
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/78 (28%), Positives = 39/78 (50%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 627
P++ L + + + IF + +V++V GR RG FV ++ +A +A
Sbjct: 172 PNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMV----PGR-RGIAFVEYDSDREATVA 226
Query: 628 KNECTGMEIDGRRIRVDY 681
KN TGM + G +I+V +
Sbjct: 227 KNGTTGMSLSGNQIKVTF 244
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 475 LSLYTTEQQINHIF-SKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGME 651
LS E + +F S+Y +++ D +T SRG+ FV F D D K A E G
Sbjct: 193 LSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQI 252
Query: 652 IDGRRIRV 675
R IRV
Sbjct: 253 CGDRPIRV 260
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 612
PS L V L TT+ + F + G + +V+++ TG+ +GF FV F D++
Sbjct: 226 PSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 37.1 bits (82), Expect = 0.003
Identities = 25/70 (35%), Positives = 36/70 (51%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V LS TE + F + V +++VID T RSRGF +V FE D A +G
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFE-TADTLSAALALSG 154
Query: 646 MEIDGRRIRV 675
++ GR +R+
Sbjct: 155 EDLMGRPVRI 164
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V L E+ + +F + P+ +V + D + GRS G C VYFE +DA+ A+
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYD-RAGRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 646 MEIDGRRIRV 675
+ G I++
Sbjct: 147 TNLKGSEIQI 156
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1
Query: 493 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 672
++ + FS+Y + K +VV D + G++RGF FV F+D + A E G I R ++
Sbjct: 43 DESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVK 101
Query: 673 V 675
+
Sbjct: 102 L 102
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 35.1 bits (77), Expect = 0.010
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 454 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 633
R L V G +++ + F +GP+ + + I +T SR F FV +ED DA+ A
Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIP-RTRTSRPFAFVEYEDSRDAEDAYY 65
Query: 634 ECTG--MEIDGRRIRVDY 681
E G +E G +RV++
Sbjct: 66 EVHGRRLERGGGVLRVEW 83
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.7 bits (76), Expect = 0.014
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 496 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 675
QQ+ +FSK+G + + T S+G+ FV F +A A N G+ +R+ V
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 676 DY 681
+Y
Sbjct: 495 NY 496
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 33.9 bits (74), Expect = 0.024
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSK-YGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECT 642
V L TE Q+ +F K GP +V + GRS+G + F DA A +
Sbjct: 59 VSNLPTDVTEAQVKELFVKSIGPCKRVSLAY-GPNGRSKGIATIIFSRPGDATRAYEQYE 117
Query: 643 GMEIDG-RRIRVD 678
G +DG R+++V+
Sbjct: 118 GRLVDGTRKMKVE 130
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.9 bits (74), Expect = 0.024
Identities = 17/70 (24%), Positives = 38/70 (54%)
Frame = +1
Query: 433 LENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 612
+E+ + +R + + GL T+++ + +++G V + +ID +T +G+ F FE+ +
Sbjct: 289 MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEK 348
Query: 613 DAKIAKNECT 642
A I + T
Sbjct: 349 SALICISAMT 358
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.5 bits (73), Expect = 0.032
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 568 GRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 681
G RG F F E+A++ G EI+GRR+RV++
Sbjct: 240 GIFRGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEW 277
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.7 bits (66), Expect = 0.22
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Frame = +1
Query: 442 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDK------------VQVVIDAKTGRSRGF 585
P P + V GLS+ T + + +F Y P ++ + + R RGF
Sbjct: 201 PLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGF 260
Query: 586 CFVYFEDMEDAKIAKNECTGMEI 654
FV F + ED A E G ++
Sbjct: 261 GFVSFANAEDQSRAIEEMNGKQV 283
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 30.3 bits (65), Expect = 0.30
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 514 FSKYGPVDKVQVVIDAKTGRSRGFCFVY--FEDMEDAKIAKNECTGMEIDGRRIRVDY 681
F +YG + K+ + A + G VY ++ EDA A G DGR +R Y
Sbjct: 142 FGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLRASY 199
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 29.1 bits (62), Expect = 0.68
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 550 VIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 678
++D K GF FV ED DA+ N+ G E G RI V+
Sbjct: 30 ILDCKL--MNGFGFVEVEDARDARDIVNDFQGKEFMGSRIVVE 70
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 593 TKQNPRERPVFASITTCTLSTGPYLEKIW 507
+K NP + P A++T C T +++K+W
Sbjct: 103 SKNNPNQNPQAAALTKCREQT--FVDKVW 129
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +1
Query: 475 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 654
+S TT + KY + + V I ++TG + + F+D+ DA+ A + +I
Sbjct: 142 ISPVTTNGSLKESLRKYSSI--IAVNIFSETGDLKKGIAI-FQDLSDAEQAVQYLSNCKI 198
Query: 655 DGRRI 669
DGR I
Sbjct: 199 DGRLI 203
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.6 bits (56), Expect = 3.6
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = +1
Query: 451 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 630
S+ LGV + E ++ +F YG + +V V+ G V F D+ DA A
Sbjct: 873 SKSLGVTNVDGTVNEARLRSLFESYGKLYRV-VLHPEHEG-----AVVEFLDIHDAGKAS 926
Query: 631 NECTGMEIDGRRIRV 675
G EI GR + +
Sbjct: 927 LALEGHEIGGRLLHI 941
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 26.6 bits (56), Expect = 3.6
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +1
Query: 466 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 645
V L+ TE + + F +G + V + K R + FV F++ EDAK A
Sbjct: 10 VGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAV-DRSYAFVEFDEPEDAKEAMENMNY 68
Query: 646 MEIDGRRIRV 675
+ R IRV
Sbjct: 69 SILCDRCIRV 78
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 34 EVDLLSVLIENIRDISLLSLLLTRNIAMSDRERSRSRTRNGSREPVPKPAVMSRGH 201
E D S +E++ ++LSL + I +SD E S +R+ + K ++GH
Sbjct: 113 ETDSSSTSVEDVNKENILSLNDSCLIKLSDDEASNKSSRSSTPRNSIKSNSSNQGH 168
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 448 PSRCLGVFGLSLYTTEQQIN-HIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 621
P++ + + GL+ E+ I +++ V V ++ + +T +SR F F F ++D+K
Sbjct: 69 PNQEIILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKFVSLQDSK 127
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 6.4
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = -1
Query: 728 SHVDARSGSVSSLCYG*STRMRRPSISIPVHSFFAILASSMSSK*TKQNPRERPVFASIT 549
S + S S SS S+ S S+P+ S + SS SS + + RP +S
Sbjct: 181 SSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSF 240
Query: 548 TCTLSTGPYLEKI 510
T+S+ ++ +
Sbjct: 241 ITTMSSSTFISTV 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,562
Number of Sequences: 5004
Number of extensions: 52583
Number of successful extensions: 183
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -