Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0107
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    92   2e-20
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    26   2.3  
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   2.3  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   2.3  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   3.1  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    25   3.1  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   3.1  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    25   5.4  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    24   7.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    24   7.1  
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    24   7.1  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    24   7.1  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 92.3 bits (219), Expect = 2e-20
 Identities = 43/76 (56%), Positives = 51/76 (67%)
 Frame = +3

Query: 156 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 335
           TT +G P+    A   VGK GP LLQD + +D    FDRERIPERVVHAKG+GAFG FE 
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFEC 72

Query: 336 THDITKYSAAKVFESI 383
           T DITKY+   +F  +
Sbjct: 73  TDDITKYTKHTMFSKV 88


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 99  LGLLKPFCMFPSYYAAFVV*YHGATHW 19
           LG+ +PF ++ +Y    V  YH  + W
Sbjct: 334 LGISRPFMVYSTYQQVLVETYHQLSKW 360


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 249 DEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESI 383
           ++++ F  E  P+ V+ A GAG  G  E T  +    A KV++++
Sbjct: 59  NDIAQFLAEIHPDVVIFAAGAGGKGGPERTRAVDYEGAIKVYDAM 103


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 3   WRARGPSESLRGIK-QRTPHSKKGTYKMASRDPATDQLINYKKTLKDSPGFITTKSGAP 176
           WR R  S   R  +    PH + G     SR PA  +    +  L+ SP  ITT  G+P
Sbjct: 328 WRTRNESYVSRTDQWDELPHGRWGD----SRSPAFGEFDAIRYGLRMSPKEITTSWGSP 382


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 102 TDQLINYKKTLKDSPGFIT-TKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRER 278
           TDQ  +     K S   ++ ++SG P+  +  ++   +NGP+ ++++NF  ++ +F +  
Sbjct: 101 TDQNESQASQAKQSSAQLSDSESGYPLDHEE-MRISEENGPSHIENLNFFSDIDNFSKTS 159

Query: 279 IPE 287
             E
Sbjct: 160 AEE 162


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 376 SNTLAALYLVMS*VTSKYPKAPAPLACTTRSGIRSLSKDDIS 251
           SNT A      S V + Y K+P  +A T R  I+S +K  IS
Sbjct: 307 SNTSALAEFAKSTVKTLYSKSPTSIAVTNRL-IKSAAKWSIS 347


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 217 PFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL*LMSWSVAGSLEAILYVPFLLCGV 50
           P + T  ++ L+P  +  L V+ P     +   +        LE I Y+PFLL G+
Sbjct: 195 PRMHTFSLSELVPLLSERLYVINPNTRMFLVSWIRLLDSIPDLEFISYLPFLLDGL 250


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 228 LQDVNFLDEMSSFDRERIPERVVHAKGAGA 317
           +  V+  + + ++++E+  E + H K AGA
Sbjct: 270 ITSVSEFEALQAYEKEKFQEMIKHVKDAGA 299


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 101 SWVS*SHFVCSLLTMRRSLFNTTERLTGPSC 9
           S++  S F C+ LT  R L + TER+    C
Sbjct: 347 SYLHKSGFACNKLTPSRILVDQTERIRISGC 377


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +3

Query: 63  KKGTYKMASRDPATDQLINYKKTLKDSPGFITTKSGAPVGIKTAIQTVGKNGPALLQDVN 242
           K G  +  S    TD  +N  +  K      T+ S A  G K    T GK+GPA     +
Sbjct: 11  KVGNTEQVSEKQHTDTALNISQDNK------TSSSSAKRGAKGRRGTKGKSGPANSSQTS 64

Query: 243 FLDEMSSFDRE 275
            ++  ++ + E
Sbjct: 65  NIEGSNALELE 75


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 256 ISSRKLTSCNKAGPFLPTVCIAVLIPTGAPDLV 158
           I S +     K+ PF P V    L P  +PD +
Sbjct: 269 IKSARARKYIKSLPFTPKVSFKALFPQASPDAI 301


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +3

Query: 129 TLKDSPGFITTKSGAPVGIKT--AIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHA 302
           ++ DS   ++    + + +K+  +  +V  +   L      L + S FDR R  ++ + A
Sbjct: 263 SMLDSSSTLSKSVNSKINLKSHQSSSSVQNSSRKLTSSQLTLRQSSLFDRVRKKQKAMEA 322

Query: 303 KGAGAFGYFEVTHDITK 353
           K A  F    V H + K
Sbjct: 323 KKAEEFKNNLVVHTLAK 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,332
Number of Sequences: 5004
Number of extensions: 30737
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)