Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0107
(385 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 91 4e-19
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 87 3e-18
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 82 1e-16
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 29 1.3
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 2.2
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 28 2.9
05_03_0586 + 15782645-15782721,15782781-15783405 28 2.9
02_04_0493 + 23435395-23436003 28 2.9
04_04_0499 + 25674024-25674233,25674515-25675072,25675320-256754... 27 5.1
08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745... 26 8.9
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 90.6 bits (215), Expect = 4e-19
Identities = 41/72 (56%), Positives = 54/72 (75%)
Frame = +3
Query: 150 FITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYF 329
F TT SGAPV + TVG+ GP LL+D + +++++ FDRERIPERVVHA+GA A G+F
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFF 75
Query: 330 EVTHDITKYSAA 365
EVTHDI+ + A
Sbjct: 76 EVTHDISHLTCA 87
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 87.4 bits (207), Expect = 3e-18
Identities = 40/70 (57%), Positives = 52/70 (74%)
Frame = +3
Query: 156 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 335
+T SGAPV TVG GP LL+D + ++++++FDRERIPERVVHA+GA A G+FEV
Sbjct: 18 STNSGAPVWNNNNSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEV 77
Query: 336 THDITKYSAA 365
THDIT + A
Sbjct: 78 THDITHLTCA 87
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 82.2 bits (194), Expect = 1e-16
Identities = 38/75 (50%), Positives = 50/75 (66%)
Frame = +3
Query: 156 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 335
TT +GAPV TVG GP LL+D + +++++ F RERIPERVVHA+GA A G+FE
Sbjct: 30 TTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFEC 89
Query: 336 THDITKYSAAKVFES 380
THD+T + A S
Sbjct: 90 THDVTDITCADFLRS 104
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 195 IQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVF 374
++ +GK+ AL +D NF + SS D R+ E KG YF + + + A++
Sbjct: 32 MEKLGKDQDAL-EDANFQQKPSSVDLNRLMELANSEKGVSQMQYFVKHWEYKRANTARLL 90
Query: 375 E 377
+
Sbjct: 91 K 91
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 247 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGES 137
R L SC GP PT C ++I P+L +PG++
Sbjct: 109 RCLLSC--CGPMDPTSCTVLVIDLAYPELWYCRPGDN 143
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 210 KNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFG 323
KNG ++LQ V+ + S D ++I + H G G FG
Sbjct: 397 KNGGSILQKVDNIMIFSKDDLKKITKNNSHVIGQGGFG 434
>05_03_0586 + 15782645-15782721,15782781-15783405
Length = 233
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1
Query: 307 PLACTTRSGIRSLSKDDISSRKLTSCNKAGPFLPTVCIAVLIPTGAPDLV 158
P+ C + + +++ DD + FLPT C ++L+ GAP L+
Sbjct: 143 PIVCCSSACWKAVGHDDQQCGHCPGQRRG--FLPTGCCSLLLSIGAPSLL 190
>02_04_0493 + 23435395-23436003
Length = 202
Score = 27.9 bits (59), Expect = 2.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 247 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL 122
R L SC GP PT C ++I P+L +PG++ V L
Sbjct: 111 RCLLSC--CGPMDPTSCTDLVIDLADPELWYCRPGDNHWVKL 150
>04_04_0499 +
25674024-25674233,25674515-25675072,25675320-25675415,
25675509-25675601,25675882-25676125,25676239-25676276,
25676377-25676478
Length = 446
Score = 27.1 bits (57), Expect = 5.1
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = -1
Query: 376 SNTLAALYLVMS*VTSKYPKAPAPLACTTRSGIRSLSKDDISSRKLTSCNKAGPFLPTVC 197
+N+L A ++V+S TS P PL T R + +SS + PF P+
Sbjct: 35 TNSLLAEWVVISRDTSFSLADPTPLKPTVRLDWYFMLSAAVSSSAMIVATATIPFFPSFH 94
Query: 196 IAVLIPTGAPDLVVM 152
P G P VV+
Sbjct: 95 RPRFRPGGLPRRVVV 109
>08_02_0678 - 19971416-19971930,19971970-19973347,19974122-19974518,
19974533-19974645,19977436-19977903,19977935-19978059,
19978192-19978452,19984254-19984647
Length = 1216
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 122 QENFKGFSWFHHH*IWSSCWNQNGDTNG 205
+E+ GF +S CWN+ GDT G
Sbjct: 1024 EEDNSGFDPHWGCVFFSFCWNEGGDTRG 1051
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,119
Number of Sequences: 37544
Number of extensions: 212847
Number of successful extensions: 550
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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