Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0107
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   30   0.56 
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)                  29   0.98 
SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)                 28   3.0  
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.0  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)                 27   4.0  
SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.0  
SB_42188| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_42498| Best HMM Match : DUF58 (HMM E-Value=8.7)                     26   9.2  
SB_13767| Best HMM Match : CENP-B_N (HMM E-Value=7.6)                  26   9.2  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         26   9.2  
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           26   9.2  
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)                 26   9.2  

>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 189 TAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAK 368
           T + T  ++GP         + + S  R+R+ E    + G G + Y     +IT+YS ++
Sbjct: 177 TQVSTTRRSGPDGKTTTTTREVVDSGGRQRVTESTRTSPGIGRYDYTSARRNITEYSPSQ 236


>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
          Length = 1417

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
 Frame = +3

Query: 3    WRARGPSESLRGIK-QRTPHSK--KGTYKMASRDPATDQLINYKKTLKDSPGFITTKSGA 173
            W   G  +S   IK  ++P  +   G Y +A++DPAT  L  Y     +   +    + A
Sbjct: 1051 WVRPGTWQSCNQIKLHKSPDVRLSDGVYMIATKDPAT-YLPVYCDVTSEPGAYTLLVTSA 1109

Query: 174  PVGIKTAIQTVGKNG-PALLQD---VNFLDEMSSFDRERIPERVVHAKGAGAFG 323
                K    TV   G P+L++D   +++ D++ S    +  +  + A+  GA+G
Sbjct: 1110 NGNWKPQEVTVRNQGSPSLIRDYSILDYADDIKSASHAKTLKYKLEARERGAWG 1163


>SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)
          Length = 261

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 148 PGESFKVFL*LMSWSVAGSLEAILYVP 68
           P +SF   L +M+W V GSL  IL +P
Sbjct: 129 PSQSFSNKLVIMAWVVGGSLGIILTLP 155


>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 93  DPATDQLINYKKTLKDSPGFITTKSGAPVGIKTAIQTVGKN 215
           +PA    +NY  TL  S   + T++   V ++ A +   K+
Sbjct: 416 EPAASDFVNYFSTLNKSHTMLATRASDKVSVRLATRAYSKH 456


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 60   SKKGTYKMASRDPATDQLINYKKTLKDSPGFITTKSGAPVGIKTAIQTVGKNG 218
            S + T  + +  P TD  I  K T KD+   ++T      G  T  +T G NG
Sbjct: 1030 SPETTAAVTTASPTTDAPITNKPTTKDAIPDVSTVKPTTDGNSTIGKTSGTNG 1082


>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
          Length = 360

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
 Frame = +3

Query: 3   WRARGPSESLRGIKQRTPHSKKGTYKMASRDPATDQLINYKKT-LKDSPGFITTKSGAPV 179
           W+    +     +K     S K + K + +      L   +KT LK  P   +TK+    
Sbjct: 222 WKTSRKTSPKTSLKTSLKTSLKTSLKASLKTSLKTSLETSRKTSLKTGPK-TSTKTSLET 280

Query: 180 GIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPER 290
            +KT ++T  K  P    +++  D++     +R  E+
Sbjct: 281 SLKTRLKTSLKTSPKTSPEISPKDKLEDKPEDRPEEK 317


>SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 129 TLKDSPGFITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAK 305
           T KD+ GF      A  G +  +QT+ + G   L+D  +LD+  ++    +   V H +
Sbjct: 251 TAKDNDGFTAFHLAAREGEEEVLQTLLRTG-VTLKDTVYLDDTDNYGNTCLHLAVKHGR 308


>SB_42188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 21  SESLRGIKQR-TPHSKKGTYKMASRDPATDQLINYKKTL 134
           SE+L+ I+ R   +  +  Y+   +DP T++L +YK  L
Sbjct: 16  SENLKNIELRFNDYCIQANYRDLGKDPGTERLEHYKSPL 54


>SB_42498| Best HMM Match : DUF58 (HMM E-Value=8.7)
          Length = 131

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 21  SESLRGIKQRTPH-SKKGTYKMASRDPATDQLINYKKTLKDSPGF 152
           ++ LRG+KQ+  H S+ G   +++ D  TD+L   KK  + +P F
Sbjct: 85  TDKLRGVKQKRQHASRFGLLVVSNYD--TDKLRGVKKKRQLAPRF 127


>SB_13767| Best HMM Match : CENP-B_N (HMM E-Value=7.6)
          Length = 390

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 21  SESLRGIKQRTPH-SKKGTYKMASRDPATDQLINYKKTLKDSPGF 152
           ++ LRG+KQ+  H S+ G   +++ D  TD+L   KK  + +P F
Sbjct: 338 TDKLRGVKQKRQHASRFGLLVVSNYD--TDKLRGVKKKRQLAPRF 380


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +3

Query: 96   PATDQLINYKKTLKDSPGFITTKSGAPVGIKTAI----QTVGKNGPALLQDVNFLDE 254
            P  + L+++  TLK       +    P   K  +    Q   K+GP++L+ +  LDE
Sbjct: 2691 PKREGLLDFTNTLKKVEDIFNSTELKPTSKKALVVLTDQKFAKSGPSILESMRPLDE 2747


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 111 VGQ*LGLLKPFCMFPSYYAAFVV*YHGATHWALVP 7
           VG  L  + P+C FP Y  A++  Y  A +   +P
Sbjct: 864 VGSVLVAVNPYCSFPIYGTAYISRYQKAVNATDLP 898


>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
          Length = 404

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 21  SESLRGIKQR-TPHSKKGTYKMASRDPATDQLINYKKTL 134
           SE+L+ I+ R   +  +  Y+   +DP T++L +YK  L
Sbjct: 16  SENLKNIELRFNDYCIQAKYRDLGKDPGTERLEHYKSPL 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,411,400
Number of Sequences: 59808
Number of extensions: 232544
Number of successful extensions: 554
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)