Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0107
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   8.6  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    20   8.6  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    20   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 207 PPFVSPF*FQQEL 169
           PP + PF FQ+ L
Sbjct: 610 PPIIEPFTFQEGL 622


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 163 LVVMKPGESFKVFL*LMSWSVAGSLEAILYVPFLLCGVRCLIPR 32
           L+VM    SF +     S  VA  +  +L +  +  GVR  +PR
Sbjct: 254 LIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPR 297


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 30  LRGIKQRTPHSKKGTYKMASRDPATDQL 113
           +RGI Q T  +K   Y M    P  D+L
Sbjct: 17  VRGIDQDTVVAKYMEYLMPDIMPCADEL 44


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 30  LRGIKQRTPHSKKGTYKMASRDPATDQL 113
           +RGI Q T  +K   Y M    P  D+L
Sbjct: 17  VRGIDQDTVVAKYMEYLMPDIMPCADEL 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,883
Number of Sequences: 438
Number of extensions: 2399
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)