Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0106
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654...    53   2e-07
11_06_0618 + 25565780-25566064,25566855-25567046,25567144-255674...    29   2.8  
01_05_0274 - 20293963-20294065,20294501-20294560,20295006-202950...    28   4.9  
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600...    28   6.5  
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365...    28   6.5  
08_02_0014 + 11255063-11255167,11256589-11256858,11257882-112582...    27   8.6  
06_01_0031 - 305457-305663,306248-306523,306824-307609                 27   8.6  

>04_04_0672 +
           27164628-27164792,27164903-27164965,27165298-27165408,
           27165454-27165537,27166081-27166194,27166901-27167494,
           27167604-27167675,27167761-27167997
          Length = 479

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
 Frame = -2

Query: 596 VSELKNGEVSGLHNWIYFSKEEAANRLNYLGYLKYRQFGE----RGAVIKFHFTQQGVDK 429
           V E+K     G  N  Y   EEA   ++Y GY+  R+ GE       ++   F   GV K
Sbjct: 364 VGEIKGRRGQG-ENEFYL--EEANGNVDYQGYIFPRRRGESPDSETQLLTIQFEWHGVLK 420

Query: 428 PVNSMFIGTSPELEMALYTLCFVTRADSECNLKLSNNDVSIMTHTFRYRSKNLIGSGYP 252
            V+S  IG SPE E+ALYTLCF    +    +++    V+I  +       + IGS +P
Sbjct: 421 SVSSTLIGVSPEFEVALYTLCFFMGGEDN-RVEIGPYGVNIKCYRM---GNSKIGSAFP 475


>11_06_0618 +
           25565780-25566064,25566855-25567046,25567144-25567416,
           25567636-25567738,25568273-25568391,25568615-25568782,
           25568908-25569386,25569742-25569850,25569905-25570070,
           25571405-25571433
          Length = 640

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 454 TSPNKEWTSRLTLCSLVHHLSWKWHCILC 368
           T  N++W    T+C L+H+    +H I C
Sbjct: 605 TGGNQKWLGNFTICHLIHNPITIYHSIRC 633


>01_05_0274 -
           20293963-20294065,20294501-20294560,20295006-20295052,
           20296065-20296155,20296276-20296427,20296891-20297049,
           20297132-20297381,20298255-20298317,20298394-20298566
          Length = 365

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 409 MNIELTGLSTPCWVKWNLITAP 474
           + I LT LST CW  W ++  P
Sbjct: 143 LGIFLTTLSTTCWALWTVLQGP 164


>10_08_0682 +
           19858131-19858230,19858313-19858954,19859041-19860016,
           19860105-19860147
          Length = 586

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 443 QGV-DKPVNSMFIGTSPELEMALYTLCFVTRADS 345
           QGV D P+NS+FI +   +E++L  +  +TR+ S
Sbjct: 320 QGVADNPMNSVFIPSPVPVELSLVQVVGITRSGS 353


>03_05_0432 - 24231984-24233048,24233391-24235160,24235261-24236582,
            24236668-24237013
          Length = 1500

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -2

Query: 395  ELEMALYTLCFVTRADSECNLKLSNNDVSIMTHTFRYRSKNLIGSGYP 252
            +++M    L  + +  +ECN +LS   +SI   T    ++N IGSGYP
Sbjct: 921  DIKMMNMKLGDLEKESNECNKELSRT-ISICNST---STENAIGSGYP 964


>08_02_0014 +
           11255063-11255167,11256589-11256858,11257882-11258285,
           11259011-11259242
          Length = 336

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
 Frame = +1

Query: 367 HKVYNAISNSGDVPM------NIELTGLSTPCWVKWNLITAPRSPNCLYF 498
           HK+Y+  S+ G++ +      N  +T LS   +   +L  AP SP+CLYF
Sbjct: 124 HKIYSC-SHGGEICLMDLERENFNITRLSE--FPILSLCQAPNSPSCLYF 170


>06_01_0031 - 305457-305663,306248-306523,306824-307609
          Length = 422

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +1

Query: 313 TSLLDSFRLHSLSARVTKHKVYNAISNSGDVPMNIELTGL--STPCWVKWNLITAPRS 480
           +SLLD F LH+L+ RV++ ++  A       P + + T +  ST   VKW     PR+
Sbjct: 64  SSLLDPFLLHTLTDRVSQLELALAARAPHPRPTSRKCTYVTESTGRKVKWTTEDKPRA 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,521,496
Number of Sequences: 37544
Number of extensions: 239636
Number of successful extensions: 488
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)